Query= MSMg01no469_p02.b1 MSMg01no469_p02.b1 CHROMAT_FILE:
MSMg01no469_p02.b1 PHD_FILE: MSMg01no469_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:41 2005
(434 letters)
>mm_chr5_31163146_31163979
Length = 834
Score = 826 bits (427), Expect = 0.0
Identities = 430/431 (99%)
Strand = Plus / Plus
Query: 4 catctatttgtctatatagcatcactacaagatagtacatcttcgtggatctgcagagat 63
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 204 catctatttgtctatatagcatcactacaagatagtacatctttgtggatctgcagagat 263
Query: 64 ctgctccaaaggggtgtgctcctacttagtgattgttatatatgtttaataataacagga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgctccaaaggggtgtgctcctacttagtgattgttatatatgtttaataataacagga 323
Query: 124 aaagactattaatacaaggactctttcctaaaatgagtccttcacagtcttgcttaatga 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaagactattaatacaaggactctttcctaaaatgagtccttcacagtcttgcttaatga 383
Query: 184 gggctcgcttgtcgcagattatataataatccgggcaggtcacttcaggatgatcgcctg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gggctcgcttgtcgcagattatataataatccgggcaggtcacttcaggatgatcgcctg 443
Query: 244 ctagttattagcttgtcccataatggctcctgacaaaaactcttccagatctgtcccttc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctagttattagcttgtcccataatggctcctgacaaaaactcttccagatctgtcccttc 503
Query: 304 taatcttattgcatcatgccgcaacagcaacctaggccccagggcttagctacccagagg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 taatcttattgcatcatgccgcaacagcaacctaggccccagggcttagctacccagagg 563
Query: 364 tcttgagatgagccttttctcccgccagttcttgggctgctgtgccccttcactccattc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcttgagatgagccttttctcccgccagttcttgggctgctgtgccccttcactccattc 623
Query: 424 tttggaatgtc 434
|||||||||||
Sbjct: 624 tttggaatgtc 634
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space: 350625
Effective search space used: 350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_p02.g1 MSMg01no469_p02.g1 CHROMAT_FILE:
MSMg01no469_p02.g1 PHD_FILE: MSMg01no469_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:41 2005
(490 letters)
>mm_chr5_31278993_31279882
Length = 890
Score = 893 bits (462), Expect = 0.0
Identities = 479/486 (98%), Gaps = 3/486 (0%)
Strand = Plus / Minus
Query: 5 ctaacaacctttaggggttagtcagggaatacctgtctcaacaacaacaaaaaagagagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ctaacaacctttaggggttagtcagggaatacctgtctcaacaacaacaaaaaagagagc 831
Query: 65 tggtgagctggcacagggggtaaaggctcttgccaccaagctcacctgagttcaatctct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 tggtgagctggcacagggggtaaaggctcttgccaccaagctcacctgagttcaatctct 771
Query: 125 gaagccaatctggtggaaggagaattaactctcacaagttgacctctgacctccaggtgt 184
| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 770 ggagccaatctggtgga---agaactaactctcacaagttgacctctgacctccaggtgt 714
Query: 185 gtgccatggcatgcataaacacaaatgtaaaaaacataaataaaggaagaaaaagaaaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gtgccatggcatgcataaacacaaatgtaaaaaacataaataaaggaagaaaaagaaaca 654
Query: 245 gatgagaggaaagagagaatggggtctgtggcattttgaattcttatattatgaaaatag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gatgagaggaaagagagaatggggtctgtggcattttgaattcttatattatgaaaatag 594
Query: 305 ttttgaccatttagattgcccaggattcccagaaacacttggcatagccgtgatgttttt 364
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 593 ttttgaccatttagattgcccaggattcccagaaacacttggcaaagccgtaatgttttt 534
Query: 365 gaattatgtttgggcagagtagggatcagaaatgttctaggtcatctagataaccaatat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gaattatgtttgggcagagtagggatcagaaatgttctaggtcatctagataaccaatat 474
Query: 425 ctaggactttcagcatctgtctcagctctgatacctccatgtgagaaaagcaacagtaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ctaggactttcagcatctgtctcagctctgatacctccatgtgagaaaagcaacagtaat 414
Query: 485 aatgtc 490
||||||
Sbjct: 413 aatgtc 408
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
