Query= MSMg01no469_p17.b1 MSMg01no469_p17.b1 CHROMAT_FILE:
MSMg01no469_p17.b1 PHD_FILE: MSMg01no469_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:44 2005
(268 letters)
>mm_chr5_150964634_150965301
Length = 668
Score = 487 bits (252), Expect = e-142
Identities = 264/268 (98%)
Strand = Plus / Plus
Query: 1 aggaaaacaattttttttcatgaaaaataggtctgagaggacagattttattacatcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaaaacaattttttttcatgaaaaataggtctgagaggacagattttattacatcttt 260
Query: 61 ttttatttcttatgttttttatgatttatttaaaagtcctcatcacacggcactagaatt 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgatttcttatgttttttatgatttatttaaaagtcctcatcacacggcactagaatt 320
Query: 121 catatttatggttaaataaataatagatatgtttgtttaaggaaaaccaagtttgaacaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 catatttatggttaaataaataatagatatgtttgtttaaggaaaaccaagcttgaacaa 380
Query: 181 gaggcacttcagagctctgtgttctggattgatttagtagccatcctctgtattcactgt 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 381 gaggcacttcagagctctgtgttctggattgatttagtagccgtcctctgtattcgctgt 440
Query: 241 gttcagattcctccataactccccactg 268
||||||||||||||||||||||||||||
Sbjct: 441 gttcagattcctccataactccccactg 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 668
Length adjustment: 9
Effective length of query: 259
Effective length of database: 659
Effective search space: 170681
Effective search space used: 170681
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no469_p17.g1 MSMg01no469_p17.g1 CHROMAT_FILE:
MSMg01no469_p17.g1 PHD_FILE: MSMg01no469_p17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:44 2005
(531 letters)
>mm_chr5_151125328_151126262
Length = 935
Score = 984 bits (509), Expect = 0.0
Identities = 527/535 (98%), Gaps = 4/535 (0%)
Strand = Plus / Minus
Query: 1 ttcataattaaacaactaaaatacagccatgacatgaccacttcttcttttgtttagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 ttcataattaaacaactaaaatacagccatgacatgaccacttcttcttttgtttagttt 576
Query: 61 aaatcatacactgctccactttggatggtatcagccattctctaaacccatttcagcagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 aaatcatacactgctccactttggatggtatcagccattctctaaacccatttcagcagc 516
Query: 121 tggccttctgatggagctgttgtagacctgcccaactcctggttccttccactaacagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tggccttctgatggagctgttgtagacctgcccaactcctggttccttccactaacagta 456
Query: 181 gggtattgaggtcactccctgcctggtgtgcccttccttatgtaccttattagctatgtt 240
|||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 455 gggtattgaggtcactccctgcctggcgtgcccttccttatgcaccttattagctatgtt 396
Query: 241 atggaatttttat----cccccccacccattacccctgcttaaacaaaacacacctataa 296
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atggaattttcatcccccccccccacccattacccctgcttaaacaaaacacacctataa 336
Query: 297 aagctcagtgtccgaaactatctaatagggcagaatgaagccacagatgtccatcctaat 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aagctcagtgtccgaaactatctaatagggcagaatgaagccacagatgtccatcctaat 276
Query: 357 ttcaaataatttcagtgtgttctggctacaaccgtcttttcataccaagtgctctgtaat 416
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 275 ttcaaataatttcagtgtgttctggctacaaccgtcttttcacaccaagtgctctgtaat 216
Query: 417 gcctaagaagggtgaagccgggtggtggtggcgcacacctttaatcccagcacttgggag 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gcctaagaagggtgaagccgggtggtggtggcgcacacctttaatcccagcacttgggag 156
Query: 477 gcagaggcaggtggatttctgagttcgaggccagcctggtctacaaagtgagttc 531
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 gcagaggcaggtggatttctgagttcgaggccagcctggtctacaaagtgagttc 101
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 935
Length adjustment: 10
Effective length of query: 521
Effective length of database: 925
Effective search space: 481925
Effective search space used: 481925
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
