Query= MSMg01no469_p23.b1 MSMg01no469_p23.b1 CHROMAT_FILE:
MSMg01no469_p23.b1 PHD_FILE: MSMg01no469_p23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:45 2005
(387 letters)
>mm_chr5_43976943_43977727
Length = 785
Score = 729 bits (377), Expect = 0.0
Identities = 384/387 (99%), Gaps = 2/387 (0%)
Strand = Plus / Plus
Query: 1 aactgggcttgggataaaattcaacacactttctgtactccagactcgttcctggttgac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactgggcttgggataaaattcaacacactttctgtactccagactcgttcctggttgac 260
Query: 61 agagagcagggggccaatgccttaaaaccaaacaacataaaacatgaacaagagaagcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagagcagggggccaatgccttaaaaccaaacaacataaaacatgaacaagagaagcct 320
Query: 121 tacgtcactcgggccgctaagatgagttgaggtgctgaaagcattgtttcacacttgctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacgtcactcgggccgctaagatgagttgaggtgctgaaagcattgtttcacacttgctc 380
Query: 181 aactgaacaaatacatcttttcacacaatgagtctaaactttcgaccattccaagatgcc 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 aactgaacaaatacatcttttcacacaatgagtctaaactctcgaccattccaagatgcc 440
Query: 241 tatgatccaagactcattgctttcaaattcctcaatgagaaagtgtaggaggaaatttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgatccaagactcattgctttcaaattcctcaatgagaaagtgtaggaggaaatttgg 500
Query: 301 tcttgaaccaaatgcttaagtgtgacatcagccagaaaaaggcactaaaactgtgcattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 tcttgaaccaaatgcttaagtgtgacatcagccagaaaaaggcactaaaactg--cattt 558
Query: 361 aagaatcaaagcagggaggaaggttag 387
|||||||||||||||||||||||||||
Sbjct: 559 aagaatcaaagcagggaggaaggttag 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 785
Length adjustment: 9
Effective length of query: 378
Effective length of database: 776
Effective search space: 293328
Effective search space used: 293328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no469_p23.g1 MSMg01no469_p23.g1 CHROMAT_FILE:
MSMg01no469_p23.g1 PHD_FILE: MSMg01no469_p23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:45 2005
(249 letters)
>mm_chr5_44141336_44141985
Length = 650
Score = 460 bits (238), Expect = e-134
Identities = 247/250 (98%), Gaps = 1/250 (0%)
Strand = Plus / Minus
Query: 1 cattgtagtattctagtgtttacccattaacaacttgattttctagatacagtgatttct 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 450 cattgtagtattctagtgtttacccattaacaacttgattttctagacacagtgatttct 391
Query: 61 ttgacaggctca-ttttttccccctctcagcactgctttatttagtgtggtgggtaacaa 119
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttgacaggctcatttttttccccctctcagcactgctttatttagtgtggtgggtaacaa 331
Query: 120 aggaagactttggtaatgtgaactcatcctcaagactgaggagtggagactgtagtattg 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 330 aggaagactttggtaatgtgaactcatcctcaagactgagtagtggagactgtagtattg 271
Query: 180 agaagagattggagaagatgccacaggcatgacacatttctatactgtttcagaagttga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 agaagagattggagaagatgccacaggcatgacacatttctatactgtttcagaagttga 211
Query: 240 tgcctgaacc 249
||||||||||
Sbjct: 210 tgcctgaacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space: 153840
Effective search space used: 153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
