BAC Information

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BAC

Clone NameMSMg01-470B09
Chromosome5 (Build37)
Map Location 58,790,595 - 58,790,837
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC625721, EG666465, Pcdh7
Downstream geneLOC100041385, LOC100041396, LOC666499, EG625870, LOC100041425
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470B09.T7 (MSMg01no470_b09.b1)MSMg01-470B09.TJ (MSMg01no470_b09.g1)
ACCAG553170AG553171
length7401,210
length of high quality
(start - end)
506 (79 - 584)---
definitionCHROMAT_FILE: MSMg01no470_b09.b1 PHD_FILE: MSMg01no470_b09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:53 2005CHROMAT_FILE: MSMg01no470_b09.g1 PHD_FILE: MSMg01no470_b09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:53 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGACACACC
GCGGAATTCAAAACATGTTTCCCCGAATCCCTGTTAGAAGCAATATTTAA
AATAATCAGAATGGATATTATACTAGATTATATCCAAAGGACTAGCGAGC
ACTTTGTTCTGAGCAGAGCTTTTATTGGATTGTATTTATAATTAATAATT
TGTATAACTATACGACCAGTAATATAATTGTATTGTTTAGCAATAATTAA
TTCTTATTATTCAGCACTAGTTTCACACAAATCATAATAATGACTCATGC
ATTTTTAAAAATAATATCTACTAGTATTGTTTTTATTCTTATCATGCCAA
CACTTACTTTTGATCTTTTTTCCAGTTCTTCCATATCTTTCCAACATTCA
AGCTTTAAACTTCACCAACACTAATTCATAAATCTTCATAGATACCTTAT
AATGTCCCAAGGGCTTAATATTAATATGTAATTAATTCACTTTCCCAAGT
GTACTTCTACCTGAAAATTATTTACATAACACTTCCACTGGTGAATTCAA
AAGAGGTTGCAGCTGTCATGCATTTAAATTGAATCCGTTTCTTAATGTTC
CTTTCTTTCCCCTCTCTATGTCTTGCAGTCTTACAGATGCAGGAGAGATT
CTTTCCCAGAAAGATCACCGACATTGCACCGACCATTACCCGAAAGCCTT
CAACAGCATCCTCAGGATCCTATTTAATATGCTACCACTG
NTTCCATAAATATAATGAAAGACAAGGGGGGGGGCCGCGCGGCGGCTGCA
CACAAAAAAGGGAGGAGNAAAAAAGAGATTGTGGTGCCACAAACCTCTCT
CGCCCACGAGAGAGGGGGGGGGGGGCGTGGTGTGGGGGGGTAAATGACAA
AACTGGTGGAATAAAAAACAAAATAAAAAAACAACTTCCTCCTCTCTCTT
CTTATATAAACTCAAACATCCTCTTAAATAACCAGACGGGCGGGAGGGCG
GTGGTCTGTTAGTGGTCCTCCACCCCCCCCCCCCCACACAATATCATACC
TTGTGTAGGGGGGTCGCTCAACAACCATCGACGCTACACCACNNCTTCCC
TTCTTTTGTTATACACTAATATTCCTTATTCTCTCCGCACACCCACATCT
CAAGATATATGTGCCGCTATTCTCCTCCTACCGTCACTCACATACAAACA
CACAAAAAAATTGTGAGGGTGGCCCAGCTCTCTCTTTCTTTCTTTTTCTC
TCTTCGTTACTTACACCACTAATACACTCTTCGTGTGTGCGGCCGACTCG
TTCACTCACCTTTTACACCCTATATTTTCACAAACATATTACAATTGTAC
GCCGTGTGTGATTCATCTCGGTCTTCTCCCCCCTCCTTTCAAACACCCCN
AAATAATTTACTATCCATATAATCCCATATATTATACCCACACGTTACTT
CACTCTATTACCACTTCTCTCTACCGTCCCCNNTATCTTGTGCTCCTCAC
TCCGGATGCCCGCTCCGCGCTCGCTGTAGCTTGTGATATCTCACACGTGT
TACTAGCACGCCACACACCTCCCATCCACTCATCCACTATTTCTGCCTAC
CTCCTCCTATCCTACATCTCATGTTCAGTCCCGTCACACATAACCTGCTT
TTCTTGTCTCATCTCGAATTTACTTCAACTCACGCACCGCCATCCATCTA
GCCTTCACACAATCACACTTATATACCTGTATCTATCTGTCTCACCGTTT
GACTCTCACTCTCCTCCTTATCTTCGCCGCATATGCTATCTCTATATTAA
TAATGTTATTATGTCCTTCTACGCCGCGTCCTCTATTCGACTAATATCTT
TCACACGATCCATTAACGCACTATTATTCTATATATCCCTATCATCACGC
AACACCGTATAGCCGTGTAACTACCACTACTCCACACATAGCTCCTCTAC
CCANATATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_b09.b1 MSMg01no470_b09.b1 CHROMAT_FILE:
MSMg01no470_b09.b1 PHD_FILE: MSMg01no470_b09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:53 2005
         (506 letters)



>mm_chr5_58790208_58791113
          Length = 906

 Score =  426 bits (220), Expect = e-123
 Identities = 238/244 (97%), Gaps = 2/244 (0%)
 Strand = Plus / Plus

                                                                       
Query: 188 actagtttcacacaaatcataataat-gactcatgcatttttaaaaataatatctactag 246
           |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 388 actagtttcacacaaatcataataatgga-tcatgcatttttaaaaataatatctactag 446

                                                                       
Query: 247 tattgtttttattcttatcatgccaacacttacttttgatcttttttccagttcttccat 306
            | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cactggttttattcttatcatgccaacacttacttttgatcttttttccagttcttccat 506

                                                                       
Query: 307 atctttccaacattcaagctttaaacttcaccaacactaattcataaatcttcatagata 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 atctttccaacattcaagctttaaacttcaccaacactaattcataaatcttcatagata 566

                                                                       
Query: 367 ccttataatgtcccaagggcttaatattaatatgtaattaattcactttcccaagtgtac 426
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 567 ccttataatgtcccaagggcttaatagtaatatgtaattaattcactttcccaagtgtac 626

               
Query: 427 ttct 430
           ||||
Sbjct: 627 ttct 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)