Query= MSMg01no470_h22.b1 MSMg01no470_h22.b1 CHROMAT_FILE:
MSMg01no470_h22.b1 PHD_FILE: MSMg01no470_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:25 2005
(242 letters)
>mm_chr5_98628508_98629149
Length = 642
Score = 453 bits (234), Expect = e-132
Identities = 240/242 (99%)
Strand = Plus / Minus
Query: 1 agagcctatcctgccatcgactagggagggaggagaatttaaaaatacttccctttaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agagcctatcctgccatcgactagggagggaggagaatttaaaaatacttccctttaaag 383
Query: 61 tatttcaaagtaagtcccttataactacttattttaaagctaaacagtgatacccaactg 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 382 tatttcaaagtaagtcccttataactaattattttaaagctaaacagtgatacccaactg 323
Query: 121 actatctaaggtatattctgacttccttatttcccagacttgacatttttacaggaggcc 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 actatctaaggtatgttctgacttccttatttcccagacttgacatttttacaggaggcc 263
Query: 181 catactatttgacccgttagtgactctttttagtgcaaaagaaaatccatccaactagtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 catactatttgacccgttagtgactctttttagtgcaaaagaaaatccatccaactagtt 203
Query: 241 ga 242
||
Sbjct: 202 ga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no470_h22.g1 MSMg01no470_h22.g1 CHROMAT_FILE:
MSMg01no470_h22.g1 PHD_FILE: MSMg01no470_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:25 2005
(371 letters)
>mm_chr5_98509179_98509950
Length = 772
Score = 712 bits (368), Expect = 0.0
Identities = 371/372 (99%), Gaps = 1/372 (0%)
Strand = Plus / Plus
Query: 1 actcttcttccaaa-ccatattttgaaactgagaatctgtttcttttcctcaccagtacc 59
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actcttcttccaaaaccatattttgaaactgagaatctgtttcttttcctcaccagtacc 260
Query: 60 ctcaccacttcctgtcccacaataattgttcaataaatgccaactaaacctttctgtagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcaccacttcctgtcccacaataattgttcaataaatgccaactaaacctttctgtagt 320
Query: 120 ccaatttcttcacacttcagatgagagtctgggcttctggacattcagcttacctccaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaatttcttcacacttcagatgagagtctgggcttctggacattcagcttacctccaag 380
Query: 180 gaagagaccttccaaacaataacgtggattctcagaggtgtgagttatctcaagaagaac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagagaccttccaaacaataacgtggattctcagaggtgtgagttatctcaagaagaac 440
Query: 240 tttaaataaagctatagatgtcagtaattggtagacagaacaaatgataatacatgtgtt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttaaataaagctatagatgtcagtaattggtagacagaacaaatgataatacatgtgtt 500
Query: 300 attaaataaactgtcctagctaaatacaagcaaattcacatgcacacacacacacacaca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaaataaactgtcctagctaaatacaagcaaattcacatgcacacacacacacacaca 560
Query: 360 cacacacacaca 371
||||||||||||
Sbjct: 561 cacacacacaca 572
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 772
Length adjustment: 9
Effective length of query: 362
Effective length of database: 763
Effective search space: 276206
Effective search space used: 276206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
