BAC Information

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BAC

Clone NameMSMg01-470I16
Chromosome5 (Build37)
Map Location 80,190,422 - 80,190,862
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470I16.T7 (MSMg01no470_i16.b1)MSMg01-470I16.TJ (MSMg01no470_i16.g1)
ACCAG553520AG553521
length826760
length of high quality
(start - end)
59 (118 - 176)441 (72 - 512)
definitionCHROMAT_FILE: MSMg01no470_i16.b1 PHD_FILE: MSMg01no470_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:29 2005CHROMAT_FILE: MSMg01no470_i16.g1 PHD_FILE: MSMg01no470_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAACCTGCGGCGCCAAACGACCACCACATACCCACCGCCGCGGAATTCC
CTGAGTTTCCAAAAAACGGATTGATGGAAACTTTCCATTTAGAGCTAATT
ATTCTATGGCCTGCCCTTATCTCTGTTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCTCTCTCT
CTGTCTCTCTCTGAGCGAGCGAGCGTGTCCGTGCGCGCATATACGTGTTA
AAACATCTCGCCACGCCACCCCAAGACTTTCTTCTCATCCCCCGCTGACA
CACGCCTCCACGACTTTTTTTTACTTACCAAACAACTCACCCATGATCCA
TCGACCATATCTACAATACCACCACAACCAAGAGTAATCCATTCCAACAC
CCCCTATCTTTTTAACCACCCCCACCCCTCCCCCCCAAAACAAACCATAA
CCCCCCGCTATACACCCAACTCCCCCTTTTTCGCCCAACACCCCACACTG
ACCAATCGCGCTCCCTCAACCCACACGCACTTCCCCTGCACCACTCCCAC
AACACTCCCGCTCTCCCCCATTCCTACCCCCCCTAACCAAACGCACCATA
CAACACACACATTCCCTCCTCACAACCCCCCCCCAATCACTCCTCTCTCC
ACTACACCATCCTCCCCCCAAAAAACAATATTCCCCCTCTTACAATACTC
ATACTTCTAAACATATATAACCCCGACACCTACAACCTCAAACCCAAATC
ACCCCACAAACACCCCCCCACAAAGCACCTTCTCCAACATAAAAGCCCAC
ACCTCCATCTATACCCCACCCCCCCG
ATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGACTCAAGCTTTATTGCTTTTGCCTTTA
TATTTCAGAGGCATGATGGTTGGCTCTCCCAAATTTTATCTCCCTCAAAC
CCATCCTTAATGTACATTAATTGCAATAACTCTTATGTGTCTGGTTGTAT
CCTGACATGTCTCTCAAAGGAAACTTGCAAACAAAAATATAGTGGGTACT
AATCTGAGAACCCAGTTAATCTCACAGCTAGTTAGCTACTCTCATCTGAT
GCTATGACACTTCTATAATATTAAATTTTCAGAAAGCTGTAGAAATGTGT
CAGTGGAGGAAACGCACCCCCCCACACACCATGCACAACAACTACAGATT
TGTAAGATGTTAGAAGAATGGCACCTACTAGAACAGCCTAGTGAGAAAAT
GGCAGCTAGGCAGCTCAAACACCCAGCAAAATACTAATGAGAATTGCGAG
TTAGCATAAGTAGAGGTATGGGATATGCAGTTGTCAGTTGTTTTGCTAAC
TTGCAGAAAAAAACCATGCCATCTAAAATATACCAATGATCACAGGAGTT
TCAAAATGAACATGATAAAGAGTTAAAGACATTGCATAAATATTTAAAAT
TGAAAATAAAATAGGTAGTGGTTAGATGCTAAATCCTAGGACATACAACA
GGATCTCCGATCATGTAGATGACTTCTGAACAGAAACCATGTTTCTGTGG
ATCTTAAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_i16.g1 MSMg01no470_i16.g1 CHROMAT_FILE:
MSMg01no470_i16.g1 PHD_FILE: MSMg01no470_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:29 2005
         (441 letters)



>mm_chr5_80190222_80191062
          Length = 841

 Score =  799 bits (413), Expect = 0.0
 Identities = 434/441 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgactcaagctttattgcttttgcctttatatttcagaggcatgatggttggctctccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tgactcaagctttattgcttttgcctttatatttcagaggcatgatggttggctctccca 582

                                                                       
Query: 61  aattttatctccctcaaacccatccttaatgtacattaattgcaataactcttatgtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aattttatctccctcaaacccatccttaatgtacattaattgcaataactcttatgtgtc 522

                                                                       
Query: 121 tggttgtatcctgacatgtctctcaaaggaaacttgcaaacaaaaatatagtgggtacta 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 521 tggttgtatcctgacatgtctctcaaagggaacttgcaaacaaaaatatagtgggtacta 462

                                                                       
Query: 181 atctgagaacccagttaatctcacagctagttagctactctcatctgatgctatgacact 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 461 atctgagaacccagttaatctcacagccagttagctactctcatctgatgctatgacact 402

                                                                       
Query: 241 tctataatattaaattttcagaaagctgtagaaatgtgtcagtggaggaaacgcaccccc 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tctataagattaaattttcagaaagctgtagaaatgtgtcagtggaggaaacgcaccccc 342

                                                                       
Query: 301 ccacacaccatgcacaacaactacagatttgtaagatgttagaagaatggcacctactag 360
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ccccccaccatgcacaacaactacagatttgtaagatgttagaagaatggcacctactag 282

                                                                       
Query: 361 aacagcctagtgagaaaatggcagctaggcagctcaaacacccagcaaaatactaatgag 420
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 281 aacagcctagtgagaaaatggcagctaggcagcttaaacacccagcaaaatactaatgag 222

                                
Query: 421 aattgcgagttagcataagta 441
           ||||| |||||||||||||||
Sbjct: 221 aattgggagttagcataagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)