BAC Information

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BAC

Clone NameMSMg01-470L07
Chromosome5 (Build37)
Map Location 126,312,863 - 126,312,999
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b
Downstream geneEG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470L07.T7 (MSMg01no470_l07.b1)MSMg01-470L07.TJ (MSMg01no470_l07.g1)
ACCAG553646AG553647
length743673
length of high quality
(start - end)
139 (183 - 321)37 (119 - 155)
definitionCHROMAT_FILE: MSMg01no470_l07.b1 PHD_FILE: MSMg01no470_l07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:42 2005CHROMAT_FILE: MSMg01no470_l07.g1 PHD_FILE: MSMg01no470_l07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:42 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGACAACCC
GCGGAANTCCAGAAAGATTCCCAACACATTTGATTAATGTCTCCTTACAT
CACATAGATATTTTCTACAGTGCATATAAGCACATATATTTTAGAATATA
CTGAAACTTAAAAATGTAAATTAAAGGAGAAAACAAAAACCTCTACCAAC
TTCAAATTAAAAAAACACATTTATTTTAGAATTCTCTAGGATACTCGCAA
TTTCCTGTATTCCCTACTCATGATGTCCATATGTTAGCATCTTACAAATT
TGTATGACAATAATGAGGAGAAAATAAATTCTGTAAGGAAAAAAAAAGAC
AGTTTTGTCTTAGACTATTTATTAACAAATGCCTGGGCCACAAACTGTGG
CTTATTCCCAGAATAACGTATTTAACACATTCAAAATATTTTATGTTTTG
CACATTTTTAGTTACCCCTTTATCTATTTACTTAGCATCTTCCTAAATAT
CTCCCTTAGCATATGTGCCAGCATCTGTCCCTGAATCTGTTTATTCTCCT
AATATTTCCTACAATACTCTCTTTTTGAAAAGCCTCACCTCATATTTTCT
TCCTCAGCTCATTTGCCATACACATTATTTAATTGCAGATGATGTTTATA
AGAGAGTCCCATAATTTGCGGCACCAACAACAACTAAATATCCCATCTAA
AACACAAAACGCACGCTTTGCGCACCGCCCCTGGCTGCCCTAA
CCCCCTTCACACCCTCNNNNCTTTCTCTCTTCCCAATGATATGTGTAXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTGTCTGGATCAGAGAGGGTAATTATTGAAGACCNTTTTG
GACTGTGAAGTGGAAGTTTTGGGGGCCTGGGGGCAGGTAGTAGATGATCT
CAGGCCCTTGTCAGGCCTTTTACGGGGGAACCAGGAATTATTTGGGGCAA
ACCCCCCTTCCATTGGGTCATCTATCCGGGAAAGGGCGGTGGGCTTACTT
TTTGGGCAATAACTTTTTTCACCTGGGGGTTAAACCCCCCCTAAAATTTC
TTTTAGGGGGGGGGGTCCCCCCTAAAAAAGCCCTCTATCTTTGGGGGGAT
TGGTGGTTCTTTTTCTCTCTGGGCCCGAACGTGTTCCCCTACCCTACAAC
CTCGTACAACTTTTTCACCAATGGGGGCGCCGCACAATTAATACTTTTTT
CTTTCCCGATGGTTCCTCCTCCCTGGGGTCTTTCTTCTTTAAATTGGGTG
TGGCCCCCCCCCCCCCCACAAATACCCCCCCTCTTCTCTCTTTTTCCTAG
TTGCGCGTCGGTTGCCTCAACAACAATGCTGCTCTTTTTTTTTTTTTTTT
TTTTTCTCCCCAACACAAACAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_l07.b1 MSMg01no470_l07.b1 CHROMAT_FILE:
MSMg01no470_l07.b1 PHD_FILE: MSMg01no470_l07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:42 2005
         (139 letters)



>mm_chr5_126312661_126313199
          Length = 539

 Score =  130 bits (67), Expect = 4e-35
 Identities = 121/139 (87%), Gaps = 4/139 (2%)
 Strand = Plus / Plus

                                                                       
Query: 3   aaaa-acctctaccaacttcaaattaaaaaaacacatttattttagaattctctaggata 61
           |||| ||||||||| ||||  |||| ||||||||||||||||||||||||||||||||||
Sbjct: 203 aaaatacctctaccgactttgaatt-aaaaaacacatttattttagaattctctaggata 261

                                                                       
Query: 62  ctcgcaatttcctgtattccctactcatgatgtccatatgttagcatcttaca-aatttg 120
            | ||||||||| | || |||||| |||||| ||||||| ||||||||||||| |||  |
Sbjct: 262 gttgcaatttcccgcataccctacacatgatttccatatattagcatcttacataatc-g 320

                              
Query: 121 tatgacaataatgaggaga 139
           ||||| |||||| ||||||
Sbjct: 321 tatgaaaataattaggaga 339


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)