Query= MSMg01no471_b16.b1 MSMg01no471_b16.b1 CHROMAT_FILE:
MSMg01no471_b16.b1 PHD_FILE: MSMg01no471_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:14 2005
(658 letters)
>mm_chr5_82029467_82030524
Length = 1058
Score = 1222 bits (632), Expect = 0.0
Identities = 650/656 (99%), Gaps = 2/656 (0%)
Strand = Plus / Minus
Query: 4 ggaattccaagtaatatgaaccactgaagggaggataactatgctaccaacctttcttcc 63
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 ggaattccaagttagatgaaccactgaagggaggataactatgctaccaacctttcttcc 969
Query: 64 ttatcagtagctcctgatattaaaatgtacttacgtattacaaaacaaaataacttttaa 123
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 968 ttatcagtagctcctgatatt-aaatgtacttacgtattacaaaacaaaataacttttaa 910
Query: 124 taataaatttaactgaggctacagatgttgctcagttcatagagtgctgccatagcatta 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 taataaatttaactgaggctacagatgttgctcagttcatagagtgctgccatagcatta 850
Query: 184 tgtgacatcctggtttagatcccaggaccgcacgtcaccctgtgtggtgatgcataactg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tgtgacatcctggtttagatcccaggaccgcacgtcaccctgtgtggtgatgcataactg 790
Query: 244 aagtcccagcacctcggaggtggaggcaggaggatcagaaattcaaggtaatgttcaagt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 aagtcccagcacctcggaggtggaggcaggaggatcagaaattcaaggtaatgttcaagt 730
Query: 304 acgtattgaacagaagatcagcctaggcacatgagagcctatctcaacacatatcctcaa 363
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 acatattgaacagaagatcagcctaggcacatgagagcctatctcaacacatatcctcaa 670
Query: 364 attcctacatgtttgtatgtacttaaattcacacacacacatgtatatgacatcaaaatt 423
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 669 attcctacatgtttgtatgtacttaaatgcacacacacacatgtatatgacatcaaaatt 610
Query: 424 cttctgaagacaaaaattgcagtgtgatttttaggtattttgagagtttatatttttcca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cttctgaagacaaaaattgcagtgtgatttttaggtattttgagagtttatatttttcca 550
Query: 484 aatttaattttattattaaaccaactaaataaatgcattccaaatcctggtgtttgttta 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aatttaattttattattaaaccaactaaataaatgcattccaaatcctggtgtttgttta 490
Query: 544 atagttaaataaatgcaatatcaatgctaactaaccaaagcttaaggaaactatatttta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 atagttaaataaatgcaatatcaatgctaactaaccaaagcttaaggaaactatatttta 430
Query: 604 ttac-ttttttttttagaataaattctacctagttaacaaaacaattttttcattt 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttactttttttttttagaataaattctacctagttaacaaaacaattttttcattt 374
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space: 679104
Effective search space used: 679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_b16.g1 MSMg01no471_b16.g1 CHROMAT_FILE:
MSMg01no471_b16.g1 PHD_FILE: MSMg01no471_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:14 2005
(661 letters)
>mm_chr5_81897878_81898938
Length = 1061
Score = 1255 bits (649), Expect = 0.0
Identities = 658/661 (99%)
Strand = Plus / Plus
Query: 1 catgcatgacaaggttccagacataactatggtcctgtaatgctgatagtgagtctgcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgcatgacaaggttccagacataactatggtcctgtaatgctgatagtgagtctgcaa 260
Query: 61 tattcctcttgctcagtacatttactgtaccttttatgtcattagatgttttcatacaca 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tattcctcttgctcagtacatttactgtaccttttatgtcattacatgttttcatacaca 320
Query: 121 caaatgccattttgccacatctgcaaaccttacttagtacatgctacatgtaagatacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaatgccattttgccacatctgcaaaccttacttagtacatgctacatgtaagatacag 380
Query: 181 agtctatagcatacaagggcatcataggttctactatctatgtttttgcaagcttactca 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtctatagcatacaggggcatcataggttctactatctatgtttttgcaagcttactca 440
Query: 241 gtgatattcacaccatcacagattaaataatgatgcatttctcaggatgcatcatagtga 300
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgatagtcacaccatcacagattaaataatgatgcatttctcaggatgcatcatagtga 500
Query: 301 tgatgttgtaacaaacacagtaaacttttgtagctttcttcctaatcagtgataggaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatgttgtaacaaacacagtaaacttttgtagctttcttcctaatcagtgataggaaga 560
Query: 361 agaaatattattgataatttccttacattgggctcattaatgatgtattatttagttttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaaatattattgataatttccttacattgggctcattaatgatgtattatttagttttc 620
Query: 421 tattattgtgctgaataccacagctacaagcaatttatagaggaaagaattcatttcttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattattgtgctgaataccacagctacaagcaatttatagaggaaagaattcatttcttt 680
Query: 481 ttgcagctcacaggccatctgcagggaagtcaggacaggaactcagggcaggaacctgga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgcagctcacaggccatctgcagggaagtcaggacaggaactcagggcaggaacctgga 740
Query: 541 cacaggaactaaaggagaagccagggagaaacgctactaactgacttattctctaacact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacaggaactaaaggagaagccagggagaaacgctactaactgacttattctctaacact 800
Query: 601 ggctcggcttgctttcttataacacccaggaccaactgtcaagttgtataattgttcatg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggctcggcttgctttcttataacacccaggaccaactgtcaagttgtataattgttcatg 860
Query: 661 g 661
|
Sbjct: 861 g 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
