ATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCG
GAATTCTTTATACTTTTCAAAATTTTCCTTGAACCCATGTTCTTAGCCCA
GAATAACTACTTGTTTTATCTCTTTTTGTATATCTTTCTAGAGATGTAAA
GTGTGTGTGCACACTTAATTGTGAATATATTTTTCACCAACCATAGCATT
TTTTTTGTTGGTCTGCTGTTTTATTGTTGTTTTGTTTGTTTGTTTTTTAC
TTTATATACCTGGAGTTTATAGCACATCAATATATTTACTCTTTTTCTTA
TGATGGGCCTATATTATTAAAAATTTAAACTCTTCAGTGACTAGCACTGT
AAAGGCATATAGTATATGCAGTGCATAGACAAGCTCACTGGCATAACAGC
CGCCTGAGTTCTTACTGGCTGGATAATCTTGGGCAGATATTTAGCATATG
TTTGCTTTATTTTTTTCATGTATAAAATAAAGTTGATGCTACCATCTACC
TCAGAGGGGTTTGTGAAAGCCAAATGAAGTAGTATGAGTCCAGTATTGGA
AACAGCACTGAGCATGTGTAATAACTCTTCGTGCAGTAGGATTTGCTCAC
TCCTGTAGTGTATGACTATTTAACTTTGGTAGATATCACCATGCATTTTC
CCACGGATATTGGTCCAGTGTATACTACCATCAGCAGCATGTGCAAGTGG
CTATTTTAACACATTATGTCAATATGACAATTTCCAAAACTTTCTGAAAC
ATGCCAATCAGAGTTT

ACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACTGAATGGCTG
AGAAACACCTGAAGATTATGGGGATCCATCCCATAATCAGCCTCCAAACG
CTGACACCATTGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATAT
AGCTGTCTCTTGAGAGACTATGCCGGGGCCTAGCAAACACAGAAGTGGAT
GCTCACAGTCAGCTATTGGATGGGTCACACGGCCCCCAATGGAGGAGCTA
GAGAAAGTATCCAAGGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACA
ACAATATGAACTAACCAGTACCCTGGAGCTCTTGACTCTAGCTGCATATA
TATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTAGT
CTTGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAGAAGT
GGGAGTGGGTGGGTGGGAAGAGTGAGTGGNNNANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTNNNTNNNNNTNNNNNNNTNNNNNN
NTNTNNNNNNNTTTTTNNNTTTTNTTTTNTTNNTTTTTTTTTTTTTTTTT
TTTNNTTTNNTTT

Query= MSMg01no471_d21.b1 MSMg01no471_d21.b1 CHROMAT_FILE:
MSMg01no471_d21.b1 PHD_FILE: MSMg01no471_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:26 2005
         (644 letters)



>mm_chr5_45952139_45953181
          Length = 1043

 Score =  924 bits (478), Expect = 0.0
 Identities = 620/716 (86%), Gaps = 80/716 (11%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattctttatactt--ttcaaaattttccttgaacccatgttcttagcccagaataact 60
           ||||||||||||  |  || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 857 gaattctttata--tgattgaaaattttccttgaacccatgttcttagcccagaataaat 800

                                                                       
Query: 61  acttgttttatctctttttgtatatctttctagagatgtaaagtgtgtgtgcacacttaa 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 acttgttttatctctctttgtatatctttctagagatgtaaagtgtgtgtgcacacttaa 740

                                                                       
Query: 121 ttgtgaatatatttttcaccaaccatagcattttttttgttggtctgctgttttattgtt 180
           |||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||
Sbjct: 739 ttgtgaatatatttttcaccaaccatagca-tatttttgttggtctgctgttttgttgtt 681

                                                                       
Query: 181 gttttgtttgtttgttttttactttatatacctggagtttatagc-------------ac 227
           ||||||||| |||||||||||||||||||||||||||||||||||             ||
Sbjct: 680 gttttgtttatttgttttttactttatatacctggagtttatagcacgtcaatatatgac 621

                                                                       
Query: 228 at---------------------------------------------------------c 230
           ||                                                         |
Sbjct: 620 atgttacagattcattttttaaaagcaacttatttagttttcctttataaaagaaaccac 561

                                                                       
Query: 231 aatatatttactctttttcttatgatgggcctatattatt--aaaaatttaaactcttca 288
           |||||||||| ||||||||||||||||| |||||||||||  |||||   ||||||||||
Sbjct: 560 aatatatttattctttttcttatgatggacctatattattaaaaaaa---aaactcttca 504

                                                                       
Query: 289 gtgactagcactgtaaaggcatatagtatatgcagtgcatagacaagctcactggcataa 348
           | |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct: 503 gcgactagcactgtaaaggcatatagtatatgcagtgcgtagacaagctcactgacataa 444

                                                                       
Query: 349 cagccgcctgagttcttactggctggataatcttgggcagatatttagcatatgtttgct 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagccgcctgagttcttactggctggataatcttgggcagatatttagcatatgtttgct 384

                                                                       
Query: 409 ttatttttttcatgtataaaataaagttgatgctaccatctacctcagaggggtttgtga 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttatttttttcatgtataaaataaagttgatgctaccatctacctcagaggggtttgtga 324

                                                                       
Query: 469 aagccaaatgaagtagtatgagtccagtattggaaacagcactgagcatgtgtaataact 528
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aagccaaatgaagtagtatgcgtccagtattggaaacagcactgagcatgtgtaataact 264

                                                                       
Query: 529 cttcgtgcagtaggatttgctcactcctgtagtgtatgactatttaactttggtagatat 588
           |||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 263 cttcatgcagtaggatttgctcactcctgtggtgtatggctatttaactttggtagatat 204

                                                                   
Query: 589 caccatgcattttcccacggatattggtccagtgtatactaccatcagcagcatgt 644
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 203 caccatgcattttcccacggatattagtccagtgtatactaccatcagcagcatgt 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1043
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1033
Effective search space:   654922
Effective search space used:   654922
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)