BAC Information

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BAC

Clone NameMSMg01-471G16
Chromosome5 (Build37)
Map Location 50,593,734 - 50,594,180
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041659, EG433885, LOC666223, Gpr125
Downstream geneEG637307, LOC100041015, LOC242987, EG624734, LOC666265, LOC100041059
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471G16.T7 (MSMg01no471_g16.b1)MSMg01-471G16.TJ (MSMg01no471_g16.g1)
ACCAG554189AG554190
length1,238797
length of high quality
(start - end)		---525 (76 - 600)
definitionCHROMAT_FILE: MSMg01no471_g16.b1 PHD_FILE: MSMg01no471_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:39 2005CHROMAT_FILE: MSMg01no471_g16.g1 PHD_FILE: MSMg01no471_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTCATACCCCCANTCGCCTTTTTCCTATTACTTTTTGTTCCTCTCGC
TTATTCCACACTTCCCCCTCTCTTCGCCCCACTCTATCCCCTCGCTCATC
ATACTAGATTATTTTNAATCCGCATTCCTGCACCCCCTCCACTGAACTCC
TAACACATCAGCATCTTTTTAACTCGCGTTGTAAGTAATGAAATATTAAT
TAACGGCGCTATTCCTACAAACTTGGTCGCGACTAACGTATCATTTCAGA
CACCTGATACCTATCCGCGAACTTCTTTTTGGCCTCTGGCCTATCACATA
TCCGCGCCTATTATCCTCTTGCGTGTCTTTCTCAACTTTCTTCCCACATT
CTCTCCACACCAACCCTTCTCCTCTCACTAATTATCTCTTCTCTCTCCTT
CACCACTTTTCCTTCTCCTCTCCCTATCATCACATATATCTCTTATGTCC
CTCCCACTTTTTGCTCTGTGTGCACCCATTATATCTCCCCCGGTCGTCAC
TCCTCTTTTTCCCCCATCTCTCCCTCATCACAATATGCGGGTCCTCTTCC
CTCTCACCCCCGTCGTGGCGTCTCTTTTTCACCCCTATTACTCTACCCTC
TGCGCCAGGTGACGCCTACTTATCCTCTCCTCTTCATATAATACATNATA
ATTCACCCACATTAAATATCAAATATACCCCCCGCCACCGCCCATTTTAT
GCTGGTGCCCTTCAATATTTTCGTATTTCTTACATACATCTCCCTTCTAC
GATAGTATGTCTCTTGTTGGCCTCTTACGGTTAGCCGACCTNTCTCATTA
CTTCGGATATATTACGCATTCCGCCGCTCGTTCACCATATATTACTCACT
CTGCTCGGTAGTATAACCACATATTCACGCGCGTGCGTGCGCGGGCGCGC
CTCTTTACCTCTCCGACCATGCATTCTCCTTACTATTATCGCGCCTCTCC
CCGCCCGCGTCCATTAATCCTTTACGTCGCTNTACCCACTCCCTTCGGGG
AATTATCCTTTCCTTCCCCTTATCCCTTCCTGTTTTACCACCTCCTTATA
GATACATATCCTCTCCACACCCACTTANCACCTATCCTCAAATATATTGA
TCGTGTCGTGTTGTTGTCATTTCCCCTTTTATTTTATTTCTTCACTGTCT
ACGCCTTCACGCTTATAATTATATTATATCTTCTCCTCCTCCTATATACC
CTTGTCCGTAACACTTCACTCTCCACTACATGCCCCCG

CGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTTGGGGACCTTCCAACAAACAC
CCACAGCTGTGATATCAAGTTCTAACAGTAGGACAGTGCAGGACATTATT
CACAGTGCAGCTGCCAGGGGCTCCCTTCTCCTTATCTCTGTGCTTCAGAT
TCATCAGATATATTATTCGCACACACAGAGTTGGAAACTCAGGTCACCCC
CTTAGTAACACTCTTTTCCCAGTACAATCCATGCCTTGTATTCCCACAGA
GTATCTGAAGACGTGTTAAACTGAGCTGGGATTAGGTTGAGGCAAGTAGG
CGCCTAGGGGGTAAAATGTAAAGAGCCACAGTTCTTCCAGCACTAAATAC
CGGAAGAAAAAGAATGCTCAAGTTCAAAGGCCTAGCTCTAGAGGACAAAC
TGGTTTTATTTCCAGACTGTTTGTGACAATGAGCAGGTGTGTTATATGCC
CCAGGACTAGACTGTTGCTAATCTGCTTAAATCCCACAGTGTTTACACAC
TGAGAGCATCTTTGATTATTAATCCCACATAGAGTCAGAGTTTAAGACTT
CAAAAGGGTTTTCTGCACACAGTAAATACAGCAGTGTTTCTGGAGGCCCA
CGATCTGGAAAGGAAACATTGAAAGGGTGGAAACTGGGGCAATACNATGG
AAAACCACGACTGAAAAGGAAGAATTTTGCTAAGAATAAATAGATTTCTT
TTATAAGGTGCTCTATGGTCCTTGAAGCACTAAACGATGAGGGTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_g16.g1 MSMg01no471_g16.g1 CHROMAT_FILE:
MSMg01no471_g16.g1 PHD_FILE: MSMg01no471_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:39 2005
         (525 letters)



>mm_chr5_50593734_50594658
          Length = 925

 Score =  857 bits (443), Expect = 0.0
 Identities = 446/447 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttggggaccttccaacaaacacccacagctgtgatatcaagttctaacagtaggaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cttttggggaccttccaacaaacacccacagctgtgatatcaagttctaacagtaggaca 388

                                                                       
Query: 61  gtgcaggacattattcacagtgcagctgccaggggctcccttctccttatctctgtgctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtgcaggacattattcacagtgcagctgccaggggctcccttctccttatctctgtgctt 328

                                                                       
Query: 121 cagattcatcagatatattattcgcacacacagagttggaaactcaggtcacccccttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 cagattcatcagatatattattcgcacacacagagttggaaactcaggtcacccccttag 268

                                                                       
Query: 181 taacactcttttcccagtacaatccatgccttgtattcccacagagtatctgaagacgtg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 267 taacactcttttcccagtacaatccatgccttgtattcccacagggtatctgaagacgtg 208

                                                                       
Query: 241 ttaaactgagctgggattaggttgaggcaagtaggcgcctagggggtaaaatgtaaagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttaaactgagctgggattaggttgaggcaagtaggcgcctagggggtaaaatgtaaagag 148

                                                                       
Query: 301 ccacagttcttccagcactaaataccggaagaaaaagaatgctcaagttcaaaggcctag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ccacagttcttccagcactaaataccggaagaaaaagaatgctcaagttcaaaggcctag 88

                                                                       
Query: 361 ctctagaggacaaactggttttatttccagactgtttgtgacaatgagcaggtgtgttat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  ctctagaggacaaactggttttatttccagactgtttgtgacaatgagcaggtgtgttat 28

                                      
Query: 421 atgccccaggactagactgttgctaat 447
           |||||||||||||||||||||||||||
Sbjct: 27  atgccccaggactagactgttgctaat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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