Query= MSMg01no471_h02.b1 MSMg01no471_h02.b1 CHROMAT_FILE:
MSMg01no471_h02.b1 PHD_FILE: MSMg01no471_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:41 2005
(596 letters)
>mm_chr5_67717806_67718801
Length = 996
Score = 1079 bits (558), Expect = 0.0
Identities = 585/594 (98%), Gaps = 2/594 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaacaagtgtctc-tcttcaggaagggccttcagtgtgcatactgaaatactta 62
|||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaacaagtgt-tcatcttcaggaaaggccttcagtgtgcatactgaaatactta 262
Query: 63 catatttctttgtttctggtttagtcaaagcagtccttaagaaaagggattatggatcaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 catatttctttgtttctggtttagtcaaagcagtccttaagaaaagggattatggatcaa 322
Query: 123 aatacactaagaataatttcatcactggagtgagagcaataaacgagttctgccttaagt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatacactaagaataatttcatcactggagtgagagcaataaacgagttctgccttaagt 382
Query: 183 ccaggtacagcgtttcctcctttcagtagtgctctgtgcgcactttatagccgcttctct 242
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 383 ccaggtacagcgtttcctcctttcagtagtgctctgtgcgcactttataaccccttctct 442
Query: 243 tttcattaattttcaaaattagcatggagataattgcttatttttgtttataaatttcta 302
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 443 tttcattaattttcaaaattagcatggaggtaattgcttatttttgtttctaaatttcta 502
Query: 303 caagatagccaggggttaaatataaaataacgattttgatgaccatataaacctttcaga 362
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 503 caagatagccaggggttaaatataaaataacgattttgatgaacatataaacctttcaga 562
Query: 363 atttgagaaaaagcaaagtgattacaaccgtgacttagacatttctaactgtaaaaatgt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atttgagaaaaagcaaagtgattacaaccgtgacttagacatttctaactgtaaaaatgt 622
Query: 423 agtcgtgtgtgggagagtgggggaggacgtgtgctgtgttgcatgcctgcaggtcagagg 482
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 623 agtcgtgtgtgggagagtgggggaggacgtgtgctgtgttgcatgtctgcaggtcagagg 682
Query: 483 caaacttacagagttggttctctcctgccatgtcgtgtgagggatacaactcaggccatt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 caaacttacagagttggttctctcctgccatgtcgtgtgagggatacaactcaggccatt 742
Query: 543 aggtttgccagtaagccttcttaccagtgattaacttaaatagaagagtgatac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aggtttgccagtaagccttcttaccagtgattaacttaaatagaagagtgatac 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_h02.g1 MSMg01no471_h02.g1 CHROMAT_FILE:
MSMg01no471_h02.g1 PHD_FILE: MSMg01no471_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:41 2005
(553 letters)
>mm_chr5_67920398_67921347
Length = 950
Score = 1031 bits (533), Expect = 0.0
Identities = 547/553 (98%), Gaps = 3/553 (0%)
Strand = Plus / Minus
Query: 1 caaacttcagcatcaactgtacgctgacctacttcaaaggaaggacttttccaccatatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 caaacttcagcatcaactgtacgctgacctacttcaaaggaaggacttttccaccatatt 691
Query: 61 gatgtgcagtttagacttttctaagaaacttccctccgtcacgtacagcaagctctgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gatgtgcagtttagacttttctaagaaacttccctccgtcacgtacagcaagctctgctt 631
Query: 121 aaaaacgagagttcaaagtgtttgcttggtttttgttgttgtttttttttttttcccttt 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 630 aaaaacgagagttcaaagtgtttgcttggtttttgttgttg---ttttttttttcccttt 574
Query: 181 gttttcaatactgaactttctggcgtggcacctttgtacagatacacaatttttttaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gttttcaatactgaactttctggcgtggcacctttgtacagatacacaatttttttaaaa 514
Query: 241 ttgtccttgagaaaccacattcacctttgaataagattaaaggttataagttcaaagtct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttgtccttgagaaaccacattcacctttgaataagattaaaggttataagttcaaagtct 454
Query: 301 tcagtaattacacacatcaccatcatcctgtactccgcgcactgtttggattggtgttgg 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 453 tcagtaattacacacatcaccatcatcctgtactccgcacactgtttggattggtgttgg 394
Query: 361 cggcacgtggggtgtcatttggatgacaaaaagaggctgacatccaacctagacatgagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 cggcacgtggggtgtcatttggatgacaaaaagaggctgacatccaacctagacatgagc 334
Query: 421 cttaaccgtgtcgtcccatttccatgccatcatagcaatttggccacatcttttaaaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 333 cttaaccgtgtcgtcccatttccatgccatcatagcaatttggccacatctttaaaaaaa 274
Query: 481 aagaaaacaggcgaatggaatccaaggagctgtggtgaatgaagcttttccttattggca 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aacaaaacaggcgaatggaatccaaggagctgtggtgaatgaagcttttccttattggca 214
Query: 541 aataaatattcca 553
|||||||||||||
Sbjct: 213 aataaatattcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 950
Length adjustment: 10
Effective length of query: 543
Effective length of database: 940
Effective search space: 510420
Effective search space used: 510420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
