BAC Information

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BAC

Clone NameMSMg01-471O22
Chromosome5 (Build37)
Map Location 39,278,869 - 39,279,031
singlet/doubletsinglet
Overlap genenone
Upstream geneStx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik, Clnk
Downstream geneLOC384174, Hs3st1, EG665839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471O22.T7 (MSMg01no471_o22.b1)MSMg01-471O22.TJ (MSMg01no471_o22.g1)
ACCAG554584AG554585
length769786
length of high quality
(start - end)
561 (49 - 609)197 (79 - 275)
definitionCHROMAT_FILE: MSMg01no471_o22.b1 PHD_FILE: MSMg01no471_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:22 2005CHROMAT_FILE: MSMg01no471_o22.g1 PHD_FILE: MSMg01no471_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCTCACCTGTTGCCTACCGAATGGCAGAGAAGCACCTGAAAAAA
TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCT
CAGAAAATTGGACATAGAACTACCGGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGGAGCCTTATNTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCC
AAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACA
AAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAA
CCTANGATACCCAAGATATAAGATACCATTTCCTAAACACATGAAACTCA
CGAAAAATGAGACTGAAGTGTAGACACTATGCCCCTCCTTAAAGTGGGAA
CAAACACCCTTGGAAGAGN
CCCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGCCTTGACAACACCTTCA
TTTTAGACTTCTGCCTCTGGAATATATTTCTTTTGGTGAAAACCACCTGG
TCTATGGTACCTGTCACAGAAGGCATAACAAATGAACCCAGACTGATTTG
CTACTTGCTACTCTGAAACACCACTTGGAAATTAGATCCTTCCTTCCTTC
CTTCCTTCCTTCCTTCCTTCCTTCCTTACTTACTTACTTACTTACTTACT
TCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTCCTTCCTCCCTTCCTCC
CTTCCTCCCTTCCTCCCTTCCTCCCTTCCTCTCTTCCTCCTTTCCTTTCT
CTCTTTCTTTCTCTCTCTTCCTTTCTTTCCTTCCTTCCAACTGTCTTTCT
GGCTTTATCTCTCTATCTTTGGTTTTATATTTCTTTTAGCTGGGACACCT
CAGCCTAGTCAGCTCAGCTTTCCAGTCATGGAATTTTCCAGTCCCTTTTG
TGTAAAGACGTGTAGTTGGCACACGAGTTGTTTCTCTTGTCCCCGCGAGC
AATAACCCATTAGAACCACTGTAAGGAACAAATGAATTATCTTGCCTCCC
ATTTGAGAAGTATATGTCCATCACAGAAGGCTTTGGATTGAATGCTTGAG
AATATTTGAAGCCGGGTCTTTGGGAAAATATTTTACTTTGCGTCTGACCT
CTATCCTCATATTTCATGCAGCCCGCGCTTCACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_o22.g1 MSMg01no471_o22.g1 CHROMAT_FILE:
MSMg01no471_o22.g1 PHD_FILE: MSMg01no471_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:22 2005
         (197 letters)



>mm_chr5_39278669_39279265
          Length = 597

 Score =  298 bits (154), Expect = 2e-85
 Identities = 163/170 (95%), Gaps = 7/170 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtagccttgacaacaccttcattttagacttctgcctctggaatatatttcttttggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtagccttgacaacaccttcattttagacttctgcctctggaatatatttcttttggtg 260

                                                                       
Query: 61  aaaaccacctggtctatggtacctgtcacagaaggcataacaaatgaacccagactgatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaccacctggtctatggtacctgtcacagaaggcataacaaatgaacccagactgatt 320

                                                             
Query: 121 tgctacttgctactctgaaacaccacttggaaattagatccttccttcct 170
           |||||||       ||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctact-------ctgaaacaccacttggaaattagatccttccttcct 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 597
Length adjustment: 8
Effective length of query: 189
Effective length of database: 589
Effective search space:   111321
Effective search space used:   111321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)