BAC Information

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BAC

Clone NameMSMg01-472A13
Chromosome5 (Build37)
Map Location 6,053,039 - 6,053,400
singlet/doubletsinglet
Overlap genenone
Upstream genePftk1, 1700015F17Rik, Cldn12, Gtpbp10, LOC667699, EG667705, A330021E22Rik, Steap2, Steap1, LOC727711, LOC546854
Downstream geneLOC100041208, EG435830
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472A13.T7 (MSMg01no472_a13.b1)MSMg01-472A13.TJ (MSMg01no472_a13.g1)
ACCAG554662AG554663
length753794
length of high quality
(start - end)		530 (43 - 572)214 (70 - 283)
definitionCHROMAT_FILE: MSMg01no472_a13.b1 PHD_FILE: MSMg01no472_a13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:31 2005CHROMAT_FILE: MSMg01no472_a13.g1 PHD_FILE: MSMg01no472_a13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGG
AATTCAAGATTTACAAAGTTACCACACCAAATATAATAATCAGTTACTGA
GAGAGGAAATTCAAGACTTCGGTAAGGAAATTGAGACACTAAAAAAATAA
CCAAAAAGGAATTTTGAAAATAAAATTCATTTCATGCTGTTTTCCCTGCT
CTGTTCTTATTTACCATAGTGCTCAAAGTCATACCAAGAATAAGACAATA
AAAATGTATTAAAAGGGTACAGAAAGAAAAAGCATTCAGATCGCCCCTAT
TTGAAGACACGATTCTATACTTAAAAGACTCCATGAACCCCAGCAGAAAT
CTGATAACCATTTTCAGTTACACACAAAGATCAGTAACTTTTGTACATAT
CAATAACAAACTTGCTGAGAAAGAACCTAGAAAAAATATCTCATTCTAAT
AGCTTCAAAAATTACCCAGGGATAAGCAAGGAGATAAAAATATCTCTACA
AGATTAAACACTGGAATAAGAAATGAAAGAGGACAATAGATACTGAAACA
AACGTTCATGTTCCTGAACTGGCAGAACTAAGCTGTGACTGAGGGGTCAC
AATGACACTAGATGGTACTTAAATGAGCACTGATTTCTAATAAATTTTGC
TAAACACTAATTGTTTCTATGTTTAAAATTACTGTAGATTCCTTTGAGAA
AGCTAAAATTTTCAAAAAAAAGCTGACAAGTTAAAGGCCCTTCTTTTAGG
AAA

CTATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTACAGAGAAATTCCTGATCTTTCCAAGACTTTTATCATGA
ATGGGTGTTGGATTTTGTCCACATGCTTTCCCAGCATCTAGCAAGATGAT
CATGTGGTTTTTGTTTTTGAGTTTGTTTATATACTGGATATGTTGATGGA
TTTCTGTATATTGAACTATCCCTGCATTCCTAAAATGAAACCTATTTGTT
TTGTATCGATGATTGTTTTGATGTGTACTTGTATTCCGATAGTGAGAACT
TTATTGAGGATTTTTCTTTTTTTTTTCATAAAGGAAATTGGTCTGAAGCT
CTCTATCTTTTGTGCCCCCTTTTGCGGTTTAGGTATCAGAGCAATTGTGT
CTTTCTAGAATGATTTGCGTTTCTTCTGCTTTTATTTTCTGTTAATCTTG
TAAAGAACGTCTATTACTCTTTCCCTGTAACCCGCATATTTTTTTGTCCC
TTCCCTTTCTGTTCTCTTGTGTCTTTTTTTTCTGTTACATTTTCCACGAC
TTGATTATATTTAGTTGCGCCTCTACCATATCTTCTCTGCTCTTTTATCC
ATGTCTCCTTTTTTTATATTGTCTTCTTCTTTTTTTTACTGTTTACATTT
CTTCTTATTTCTTCTTTCTTTTTCCCTTGCCCTTTTCCTCTCTCTTTGCT
TCTTTCTCCCTCTTTTTGCTTTATTGTCTCTTTTTTGCACCTTTGTCACC
TTTACCATCCGTCGTATCCGCTTCTCTTTCTTTATCTCTCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_a13.b1 MSMg01no472_a13.b1 CHROMAT_FILE:
MSMg01no472_a13.b1 PHD_FILE: MSMg01no472_a13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:31 2005
         (530 letters)



>mm_chr5_6053039_6053968
          Length = 930

 Score =  677 bits (350), Expect = 0.0
 Identities = 359/362 (99%), Gaps = 1/362 (0%)
 Strand = Plus / Minus

                                                                       
Query: 24  aagttaccacaccaaatataataatcagttactgagagaggaaattcaagacttcggtaa 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 362 aagttaccacaccaaatataataatcagttactgagagaggaaattcaagacttcagtaa 303

                                                                       
Query: 84  ggaaattgagacactaaaaaaataaccaaaaaggaattttgaaaataaaattcatttcat 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ggaaattgagacactaaaaaaataaccaaaaaggaattttgaaaataaaattcatttcat 243

                                                                       
Query: 144 gctgttttccctgctctgttcttatttaccatagtgctcaaagtcataccaagaataaga 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gctgttttccctgctctgttcttatttaccatagtgctcaaagtcataccaagaataaga 183

                                                                       
Query: 204 caat-aaaaatgtattaaaagggtacagaaagaaaaagcattcagatcgcccctatttga 262
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 caataaaaaatgtattaaaagggtacagaaagaaaaagcattcagatcgcccctatttga 123

                                                                       
Query: 263 agacacgattctatacttaaaagactccatgaaccccagcagaaatctgataaccatttt 322
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 agacaggattctatacttaaaagactccatgaaccccagcagaaatctgataaccatttt 63

                                                                       
Query: 323 cagttacacacaaagatcagtaacttttgtacatatcaataacaaacttgctgagaaaga 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  cagttacacacaaagatcagtaacttttgtacatatcaataacaaacttgctgagaaaga 3

             
Query: 383 ac 384
           ||
Sbjct: 2   ac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space:   478400
Effective search space used:   478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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