BAC Information

Click to search

BAC

Clone NameMSMg01-472D10
Chromosome5 (Build37)
Map Location 145,494,687 - 145,494,923
singlet/doubletsinglet
Overlap genenone
Upstream geneEif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2, EG621967
Downstream geneTmem130, LOC100039427, Trrap, Smurf1, AW146299, EG231885, EG666992, 1700018F24Rik, Arpc1a, Arpc1b, Pdap1, Bud31, Ptcd1, Cpsf4, Atp5j2, Zkscan14, Zkscan5, EG622116, Zfp655, LOC677270, EG666311, EG622127, LOC100039566, Cyp3a16, LOC100041375, LOC667065
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472D10.T7 (MSMg01no472_d10.b1)MSMg01-472D10.TJ (MSMg01no472_d10.g1)
ACCAG554800AG554801
length748784
length of high quality
(start - end)
437 (70 - 506)237 (75 - 311)
definitionCHROMAT_FILE: MSMg01no472_d10.b1 PHD_FILE: MSMg01no472_d10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:46 2005CHROMAT_FILE: MSMg01no472_d10.g1 PHD_FILE: MSMg01no472_d10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAGTCTAAATTTGCGGCGCTAAACGATCACATTCAAAGAGGACCGCGGAA
TTCATATTACCAAACTGTGGTTGGGAAAATGGCTCGGCCACACAAGCATA
AAGACTTGGTCAGACTGCAGAACTCACATAGAAAGGCAGACGTGGCTGGG
CATGGTGGCACAGGCTTTAATTCCAGCTCTTGGGAGGCAGAGAATCAGGC
AGATCTCTGTGAGTTTTAAGAGGCCAGACGTAGTGAGATCAAGAACAGTC
AGGGCTATGTAGAAAGATCCTGCCTTTCTTTCTTTTTTTTTTTAAGTATG
TGAGTACACTGTTATATCTTCAGACACACCAGAAGAGGGCATCAGATTCC
ATTACAGATGGTTGTGAGCCACCATGTGGTTGCCGGAAATTGAACTCAGG
ACCTCTGGAAGAACAGTCAGTGCTCTCCAGCTCCCAAAAGACCCTGTCTT
AAAACACCAAACAACAAGAAAACCCCAGACACCATGTGTGGTAGTGTGGG
GAGGTGGAACTGGCTGATTCCTGGATCTCACTGGCTGTCCAGCCCATTCT
GTCATGATCTAACTTTAGCGATAAATCCTGCCTCACATCCATGCCCATTA
CCCTGTTGTTACGCACGCACCCCCTCGCTTTCTCCTCTCCTGCCTCCGCT
TTTCCCATAAACTTCACACGCTTACTTTACAAGTTCAAGTTGTTCTTCTG
CTCATGCGTTTTCCTTTTTCTCCGTTTGCCCCGGCTTTTCCCTTATTT
CCCCAATGACAGGGGTAGGCTGGAGGCCGCCTTTTCAACAAATTTAGGTG
AACTATAGAAGACTCGAAGAATTCACGTCTTTCTCTTTTGCTTTCTAGGG
ATGAAAAAGCCATTCACCCTGCCATGCATTTCCCACCATGGGTCTTTGGC
ATCCCACCAGAGACCCAAAGCAAGACTGCACACCAGTCTTGGTCTGAAAT
CTCCAAAAGTCAGTCAAAGAAACCTTTACTCAATGTTGGATCCTGTGAAT
TTAGATTAGTAACGAAGGTTCAGGCAGTTGTTGGAGATTTGAAGGGAATG
AACTGATTTGGTATTTTTTTTGGCTGCAGACAGACAGCCCAGGCTCTCTG
CGAAAGAAGTTCATCCCCTGCCATACTGGCCTTCTGTGACTTCTTGCATA
GGTTCATAGCACCCCCTGATGTCCACTACTGGAATTGCACTGCAACTTCA
TGTATGCATTCAAGCTATGAGATGTTTGCATATGCATAAAGTTTTGTTTT
TATTTAACCTCTTCGTATTTATTGCACTCTTACTTCTCTCCCTTTTTCTA
CCTTTGTTCCCTTTTACCCTCTTTTTTTCTTTTATTACCTCTTTTTTTCT
TTTTCCCTACATCATTTTGGTACCATGCACCATCCCTCTCTTTATCACAT
CCCATACTTTTCACCTTTATTCATTAATTTTCTCCCTTTTACCAATTTTT
ATCAAATTTCTTGCTTCCTCTACTATTCCCTTCATTTTGTTTTATTCTAT
CCTCTTTCTTCTCTCTTCATTTTTTTATCTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_d10.g1 MSMg01no472_d10.g1 CHROMAT_FILE:
MSMg01no472_d10.g1 PHD_FILE: MSMg01no472_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:46 2005
         (237 letters)



>mm_chr5_145494487_145495123
          Length = 637

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acgtctttctcttttgctttctagggatgaaaaagccattcaccctgccatgcatttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acgtctttctcttttgctttctagggatgaaaaagccattcaccctgccatgcatttccc 260

                                                                       
Query: 61  accatgggtctttggcatcccaccagagacccaaagcaagactgcacaccagtcttggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatgggtctttggcatcccaccagagacccaaagcaagactgcacaccagtcttggtc 320

                                                                       
Query: 121 tgaaatctccaaaagtcagtcaaagaaacctttactcaatgttggatcctgtgaatttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaatctccaaaagtcagtcaaagaaacctttactcaatgttggatcctgtgaatttag 380

                                                                    
Query: 181 attagtaacgaaggttcaggcagttgttggagatttgaagggaatgaactgatttgg 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attagtaacgaaggttcaggcagttgttggagatttgaagggaatgaactgatttgg 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)