BAC Information

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BAC

Clone NameMSMg01-472H17
Chromosome5 (Build37)
Map Location 46,944,641 - 46,944,881
singlet/doubletsinglet
Overlap genenone
Upstream gene9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576, EG666103
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472H17.T7 (MSMg01no472_h17.b1)MSMg01-472H17.TJ (MSMg01no472_h17.g1)
ACCAG555005AG555006
length877787
length of high quality
(start - end)
148 (72 - 219)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no472_h17.b1 PHD_FILE: MSMg01no472_h17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:08 2005CHROMAT_FILE: MSMg01no472_h17.g1 PHD_FILE: MSMg01no472_h17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTATGTTTCCAGACCATGAGGAAAAAACATCTTTTCAAGGAAAAA
AAAAAAAAAAAGAAGAATAAGAAGGCAAGGCAAGGGAGGGAGGGAGGAGG
AGGCAGAGGAGGAAAGGAACTTTCCAACTTTGAGAGTCAGAACATAGCAA
GAGAATCACCAATTTTGCAGAAGGAGTCTTGATTCTTCCTGTGCTAATAT
TTTCACCCTGTTACAACAGTATCTGCTGCTCTAGTTGAGCCTTCTTCCCA
CTTGGGCAATTATTTTTTTTTCTTCTCACCAGCCCCCGCACCCACTCTTT
TTTCCTTTTTTTTTTTTCTCTGCTGTATTTTGTGAATAGTAAATATAACA
CTGTCTCTATAGTTCTTGTTTTCCACCCCCCCCTCCTTGTTTTTTCTAAG
CTGTCTATGTTTTCTTCCTTCTTCTTCTTTTCCCTCCTTCTTGATGTTTC
TTCATTCTTTTCTGCCTTTCTCCTTTTCTTGACCTCTTATCTCTTCCTCT
TCATTCTTCTTACTTTCCTCTTATCTCTTCTTCCTCTTTCCTTTTCTCTC
TTCTTCTTTCTCTCACTGTTCTCTTCTCTTCTTTCTCCCTCTTACACTTC
TCCTTACTCTCCTCATCTTTTTTTCTCACTCTTCCTTCTTTTCTCTCACT
CCCTTCTAACACTCTTCTTTGTTTTCTCCTCTATGCTCCCCCGCCGATTT
CTCCCCTCCCTCTCCCTCCCCTTTCCTTTTTCTCCTCTTACATCCCTTCT
CTCCCCTCTCTACTTTTTATACTTTTTTATTCTTTGTCTCTCTCGCTCTT
CTCTCACTTTTAATTTTCTTTCGATAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTATATTTGGAAGATATGGGGCT
TTGAAGGTACACTGAGAATATTTCTCCACTGGGTAAATTATCCCTCAGAG
TATCACTTACACTAACACTTGTACTTATAAGAAACCCGATTTAATGTTTG
CTCATTGCATATATTTGGCTTGGCTCATGCTTCTCATTTGGGAACACATA
AAATCACTTGTGTTTTAGTTTTCAAAAGAAGTGTGGCATTTCCACCCTTT
GACATAAAAACATTTATTTATGTTTGAATGGAGCTTTCAAAACTCAAGCA
GATTTAATTCTATACTTATGAATAAAAGATTTGCACTTAGATTAGATTTT
TCTCCAAGGCACCTGCATCGTCCCTTTTATTGATCATTATGTTGCATGCC
CAAGTCTGTCTCCTTTTTTTGCGTTCCTTTTGTATAACTCCTTTCCCTCG
TATTTTTTTTCTTTCATTTTTTTTCCCTCCTCTTTATCTCTATTTTCCTT
TCCTTTACTTTTTTATCTTTTTTCCTCCTTTTCTACCCTTGTCTATCATG
CCTCCTCCCTCTTTTTTCTACCCGCTCTTTTTCTTTACTCTTTACGTTTT
CCTCCTTTTTTTTTTTTTTCCCCCTTCCTTTTTCCATTTTCTCCTATTGT
CTATCTATTACCCCCTTATTCTTCTTTTTTCTTTTTTCTCTTCCCTTTTT
TTTTTACTTCTCTCTTATTTCCCCCCTTTCACTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_h17.g1 MSMg01no472_h17.g1 CHROMAT_FILE:
MSMg01no472_h17.g1 PHD_FILE: MSMg01no472_h17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:08 2005
         (241 letters)



>mm_chr5_46944441_46945081
          Length = 641

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttatatttggaagatatggggctttgaaggtacactgagaatatttctccactgggtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttatatttggaagatatggggctttgaaggtacactgagaatatttctccactgggtaa 382

                                                                       
Query: 61  attatccctcagagtatcacttacactaacacttgtacttataagaaacccgatttaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attatccctcagagtatcacttacactaacacttgtacttataagaaacccgatttaatg 322

                                                                       
Query: 121 tttgctcattgcatatatttggcttggctcatgcttctcatttgggaacacataaaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgctcattgcatatatttggcttggctcatgcttctcatttgggaacacataaaatca 262

                                                                       
Query: 181 cttgtgttttagttttcaaaagaagtgtggcatttccaccctttgacataaaaacattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttgtgttttagttttcaaaagaagtgtggcatttccaccctttgacataaaaacattta 202

            
Query: 241 t 241
           |
Sbjct: 201 t 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)