BAC Information

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BAC

Clone NameMSMg01-472L19
Chromosome5 (Build37)
Map Location 12,946,556 - 12,947,056
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041626, EG668059, Sema3d, LOC668015, LOC100042917, LOC668069
Downstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067, LOC668085, LOC384149, LOC384148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472L19.T7 (MSMg01no472_l19.b1)MSMg01-472L19.TJ (MSMg01no472_l19.g1)
ACCAG555200AG555201
length742768
length of high quality
(start - end)		501 (71 - 571)239 (79 - 317)
definitionCHROMAT_FILE: MSMg01no472_l19.b1 PHD_FILE: MSMg01no472_l19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:28 2005CHROMAT_FILE: MSMg01no472_l19.g1 PHD_FILE: MSMg01no472_l19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTATTACCTTCTCCCCTCATCTCTTCTTTCCCCTTTTGT
TCTCTGCATACTTTAGCACTCACATGCTAATATTAGCACTAATGCCTCAG
GCCTAAATAGCAATAATTACTGGATGACATCCTGGTTTCTATTTAAGTTG
ACAACTCAATAACTTGACATATGCATTACATCTCTATTACACTGGAATCT
AAATGGCACTTTGTAAAGTATTCCTTTTATATTTAGTTCACAGTCTGATC
ACACTAGAACTTGTGCTCCTTGTGTGTCTGTTAAAGACTGGGAGAGATGT
CATTATCTCTAAGTTCTCACCAGTGGTAGATAATGGAGAACTGTATTTAC
TGAGAAAAGACTTTTAATAATTTGTATTTCTTTGAAAAATAGAGATAAAA
ATAGCTTTATTTGAGCAATATAAAATGTAGTAACTTTAAAATACTACACT
AAAAAATTCATTCTGACATATCCGGTGTGTCTATTGAGTGAATGAGTCTA
CTCTTTTGAATTAAAAGTGGAAGATGTTCATAAACAAATCCCCCTTTATA
AAAAACATTGTATGAATTTAGGTCATTTTAGAATAACTTGGATTTCCATA
AGAAAAAGGCCGCAAAAATTATTTTTTAAATATCTTTACTCCTTTAAACT
AATCTTTTTACGGCCCAACCTTAAAAGAAAAAAAAATTTATT

NNCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCACGGGGTTTGGAACTAGGATA
GGAAAAATTAGTCACTGACTCCAAGTAGAGAGAACAGTGATAATTACCTG
CTATGAACACGTATTAATTAATACTGTCTGTGGCTCCAGATAGAGAGCTC
AACAGATATATATCATATCATGTCTTAATAAAATAAATGTCTGTAGCTCC
AGGTAGAGAAAGTTTGAAGTAATTGTTTTAATGATGGTATAAGGATATAT
TGCTCTATTAAGTCTTTTTTTATACTCAAATTCTGTCTAACTTCGGATCC
ATGGAAATTTTGGGTTTAAATCCTGGTTTGACTAGCTGCCTGCTTATAAG
AAGTTATAGATAGAAGTGTGAATCAATTGTTTTAAGAATGGTATTTAGAT
ATATTGCTCTATTAAGTCTTACAGGATACTCAAGTCCTGTCCCATGTGTG
CTCCATGGCAATTTGGGGTCAATATCCTGCACGTCACAATATAATCTATC
CTCCCCTTAGTTTATACTTTATTTTAATTTCTCTTTCTTTTTTTTTGTCC
CTGTTTTTCTTTCTCCAATCGTGTTTCGTCTTTTTTCCCTTTCATCCCAT
ACTTATCTTTTTTTTTTTACGAGTTCTCCTACTATACGCTCTTTTTTCGT
TACATTCATCTTTTCCCTATCTTTCCTTTTTTTTTCCCTTCCTTTTCTCA
CCCCCATCTTTTTATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_l19.b1 MSMg01no472_l19.b1 CHROMAT_FILE:
MSMg01no472_l19.b1 PHD_FILE: MSMg01no472_l19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:28 2005
         (501 letters)



>mm_chr5_12946356_12947256
          Length = 901

 Score =  961 bits (497), Expect = 0.0
 Identities = 500/501 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctcccctcatctcttctttccccttttgttctctgcatactttagcactcacatgctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tctcccctcatctcttctttccccttttgttctctgcatactttagcactcacatgctaa 642

                                                                       
Query: 61  tattagcactaatgcctcaggcctaaatagcaataattactggatgacatcctggtttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 tattagcactaatgcctcaggcctaaatagcaataattactggatgacatcctggtttct 582

                                                                       
Query: 121 atttaagttgacaactcaataacttgacatatgcattacatctctattacactggaatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atttaagttgacaactcaataacttgacatatgcattacatctctattacactggaatct 522

                                                                       
Query: 181 aaatggcactttgtaaagtattccttttatatttagttcacagtctgatcacactagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 aaatggcactttgtaaagtattccttttatatttagttcacagtctgatcacactagaac 462

                                                                       
Query: 241 ttgtgctccttgtgtgtctgttaaagactgggagagatgtcattatctctaagttctcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttgtgctccttgtgtgtctgttaaagactgggagagatgtcattatctctaagttctcac 402

                                                                       
Query: 301 cagtggtagataatggagaactgtatttactgagaaaagacttttaataatttgtatttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cagtggtagataatggagaactgtatttactgagaaaagacttttaataatttgtatttc 342

                                                                       
Query: 361 tttgaaaaatagagataaaaatagctttatttgagcaatataaaatgtagtaactttaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tttgaaaaatagagataaaaatagctttatttgagcaatataaaatgtagtaactttaaa 282

                                                                       
Query: 421 atactacactaaaaaattcattctgacatatccggtgtgtctattgagtgaatgagtcta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 atactacactaaaaaattcattctgacatatccggtgtgtctattgagtgaatgagtcta 222

                                
Query: 481 ctcttttgaattaaaagtgga 501
           |||||||||||| ||||||||
Sbjct: 221 ctcttttgaattgaaagtgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space:   437481
Effective search space used:   437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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