Query= MSMg01no473_d18.b1 MSMg01no473_d18.b1 CHROMAT_FILE:
MSMg01no473_d18.b1 PHD_FILE: MSMg01no473_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:14 2005
(254 letters)
>mm_chr5_138111441_138112094
Length = 654
Score = 414 bits (214), Expect = e-120
Identities = 246/262 (93%), Gaps = 10/262 (3%)
Strand = Plus / Plus
Query: 1 tggctcacaaccatctgcatttccaggggatctgatgccctcttctggtctcagatagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tggctcacaaccatctgcatttccaggggatctgatgccctcttctggtctcagatagca 254
Query: 61 ctactcccacatggtccacacaaacatacaggcatgtatgtatgtgtatgtatg------ 114
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 255 ctactcccacatggtccacacaaacatacaggcatgta--tatatgtatgtatgtacata 312
Query: 115 --tacatacgtaccatacatgtaaaataataaaataaagatttaagtaggaatatatagt 172
||||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 313 catacatacataccatacatgtaaaataataaaataaagatataagtaggaaaatatagt 372
Query: 173 cacactcacaggtagcatgcatagcatgaaggtatccgtgccaagtttggaagaactggc 232
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct: 373 cacactcacaggtagcatgcacagcatgaaggtatccgtgccaagtttggaagaattggc 432
Query: 233 cgtgaccatgccagcataagtg 254
||||||||||||||||||||||
Sbjct: 433 cgtgaccatgccagcataagtg 454
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no473_d18.g1 MSMg01no473_d18.g1 CHROMAT_FILE:
MSMg01no473_d18.g1 PHD_FILE: MSMg01no473_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:14 2005
(249 letters)
>mm_chr5_138309501_138310149
Length = 649
Score = 445 bits (230), Expect = e-129
Identities = 242/246 (98%)
Strand = Plus / Minus
Query: 1 cacagctggcctggagcacacaagggacaagaggaatccttcactgatgaacctgggagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 cacagctggcctggagcacacaagggacaagaggaatccttcactgatgaacctgggagc 387
Query: 61 catggtcacaatgctcctggctaaagttgtggtcataatcctagtctatggatggatgat 120
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 386 catggtcacgatgctcctggctaaagttgtagtcataatcctagtctatggatggatgat 327
Query: 121 cttcctgaggtggaagcaaaggtaatgggtaaaggacaggcctcacccaggcttccccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cttcctgaggtggaagcaaaggtaatgggtaaaggacaggcctcacccaggcttccccac 267
Query: 181 tgggagtgttctcagctgtggaagatggagaagggcagccttgtgcagggaacagtaaag 240
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 266 tgggagtgttctcagctgtggaagatggagaagggcaggcttgtgtagggaacagtaaag 207
Query: 241 agaaca 246
||||||
Sbjct: 206 agaaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
