BAC Information

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BAC

Clone NameMSMg01-473I19
Chromosome5 (Build37)
Map Location 152,035,849 - 152,036,257
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667470, Fry, LOC100042068, Gm5, XM_359419, Brca2, B230342M21Rik, BC037393, Aprin, LOC100040180, Kl, LOC667510, Stard13
Downstream geneLOC630708, LOC625175, LOC100042166, EG435877, EG632649, EG632671, Rfc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473I19.T7 (MSMg01no473_i19.b1)MSMg01-473I19.TJ (MSMg01no473_i19.g1)
ACCAG555822AG555823
length750793
length of high quality
(start - end)
234 (80 - 313)409 (77 - 485)
definitionCHROMAT_FILE: MSMg01no473_i19.b1 PHD_FILE: MSMg01no473_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:40 2005CHROMAT_FILE: MSMg01no473_i19.g1 PHD_FILE: MSMg01no473_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXATAGTCAGCACCGCGCGGAA
TTCTAAAAGTNCTTCCATGAATCCCTGNCAGCCACTGACTGCTGGCAACT
TTATTTCCCAATCAGAGCCAATTGGGAGCAGGGACCTTAGCACAGACAAG
TGGGTCCCCATGTGATTTCAGGAGTTGAATTAACACAAATAGCATTAGAA
CCAATCTACAACATTAACCACTTACTTTATTTTAATTAATTAATTTATTT
ATTGTGTGTCTAAGCATGTGTGTAGTATGTGTGTGATATGTTATGGTGGT
ATGTGTATATTGNNNTGTTTTTCTTTTTTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTTTTTTCCCCCCCCCCCCCCCCCCTTTTTTTCTTTTTTCTT
TTTTTCCTTTCCCCCTTTTTTCTTAATTAAACCTTTTCCTTTTCCCTCCT
TCCTTTCTCCTCCCCTCCTTTTCTTTTTCTCATTCTTCCTTCCTTATTCT
TCTTTCTTCTCTTTCTTAATTTCTTCCCTCATTCTTTTTCCCTCCTATCT
CTCTTCTTTCTCCTCCCCTTTTTTTTATCCCCCTTCTCTTTTCTCTATCC
CTTTTTTTTTTTTTTTACTTATTTAAATTTCCTACTTCTTTCCCTTATAA
TTTTTTTTTTTTTTTTTTTTTCTCCCCCCACTCTTTTTACTTTCCCCTCA
CCCTACACTATCCTCTTTTTTATCACACACTTACTCCTTTATATCTTTTN

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAAGTCTTTCTCAGGCATTTCCT
ATATGGACACTTCGGATCCTGAAGGCATCGGGGTGGTGTGTGGTCGTTTG
CTTTCAAAAACTGTTCACCTGTTTCCCTCCAAACTTCTAGTCTCTACCAC
TACGGTAAGCTCTTGCCCAGTCGCGCCACCCTTGCCAGCCCTCAGCCACG
TGGAAATGCCAATCTGGGGCACAGTCACAGCTACCTTTGCGCCCGCCCGA
GTGGAGGACTCTGGTCCGCGCACAGTTCATCTGTCAGGCACTGTGCCCGA
TCTGACTGGTCAGAACCTGCACCCAGGGCCCCGGGACACCGACCTGCCAG
CCGCCGCTCGCGGACGTTCCTCCACAGCAGATCCCAGGCTCTGGCGCTGG
AGTCCCGCAGCTGCTCGCTTATCGATCTCCGGAGAGGCGCGTACACCGTT
CTGCGTGGGCTGCTCATCTCAGACGAGTCCTCATGTCTCTGTGTTATCTG
TTCACGATCAATCATAACGTCTTCGATTTTTGAACATATCGTTCACCCTT
TTATTCGTGTGTCCTCTCTTCTGTTTCCTGTAAATGCTTTCTCTGTTTAT
ACGATTTGTCTTTTTTTTCCTATCTATTGTGTTTAACTTAATTTTTTTTT
TATACTCCTCCTCTTTTAGTTCATTCTTTCTTTGTTATCTCTATTTACCA
CTTCCTATATATTTCTTTCTACCTTTATCATCTCCTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_i19.g1 MSMg01no473_i19.g1 CHROMAT_FILE:
MSMg01no473_i19.g1 PHD_FILE: MSMg01no473_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:40 2005
         (409 letters)



>mm_chr5_152035649_152036457
          Length = 809

 Score =  752 bits (389), Expect = 0.0
 Identities = 404/409 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaagtctttctcaggcatttcctatatggacacttcggatcctgaaggcatcggggtgg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ctaagtctttctcaggcatttcctatatggacacttcggatcctgagggcatcggggtgg 260

                                                                       
Query: 61  tgtgtggtcgtttgctttcaaaaactgttcacctgtttccctccaaacttctagtctcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgtggtcgtttgctttcaaaaactgttcacctgtttccctccaaacttctagtctcta 320

                                                                       
Query: 121 ccactacggtaagctcttgcccagtcgcgccacccttgccagccctcagccacgtggaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccactacggtaagctcttgcccagtcgcgccacccttgccagccctcagccacgtggaaa 380

                                                                       
Query: 181 tgccaatctggggcacagtcacagctacctttgcgcccgcccgagtggaggactctggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgccaatctggggcacagtcacagctacctttgcgcccgcccgagtggaggactctggtc 440

                                                                       
Query: 241 cgcgcacagttcatctgtcaggcactgtgcccgatctgactggtcagaacctgcacccag 300
           |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgcgcacaggccagctgtcaggcactgtgcccgatctgactggtcagaacctgcacccag 500

                                                                       
Query: 301 ggccccgggacaccgacctgccagccgccgctcgcggacgttcctccacagcagatccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccccgggacaccgacctgccagccgccgctcgcggacgttcctccacagcagatccca 560

                                                            
Query: 361 ggctctggcgctggagtcccgcagctgctcgcttatcgatctccggaga 409
           ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 ggctctggcgctggagtcccgcagctgctcgcttagcgatctccggaga 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)