BAC Information

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BAC

Clone NameMSMg01-474B11
Chromosome5 (Build37)
Map Location 34,647,215 - 34,647,451
singlet/doubletsinglet
Overlap genenone
Upstream geneMaea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28
Downstream geneEG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112, LOC100040480, Tnip2, Sh3bp2, Add1, 0610009O03Rik, Nol14, Gprk2l, Hdh, A930005I04Rik, Rgs12, Hgfac, Dok7, Lrpap1, Adra2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474B11.T7 (MSMg01no474_b11.b1)MSMg01-474B11.TJ (MSMg01no474_b11.g1)
ACCAG556235AG556236
length1,761721
length of high quality
(start - end)
---240 (73 - 312)
definitionCHROMAT_FILE: MSMg01no474_b11.b1 PHD_FILE: MSMg01no474_b11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:25 2005CHROMAT_FILE: MSMg01no474_b11.g1 PHD_FILE: MSMg01no474_b11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCGGCTGTTTGAGAGACGTCTTCTGAGTAGTGTCAACTAGCACAGATTG
CACGCTCTCTCCCTTCTAGTAGAGTCGACTAGCTGCGCTGTCGAATAATA
GATAGGCGCCCGCCGTGCTGAGGGCGNGCGGANAGATGGGAGAAGACGAG
AGACAAGTCACCAANAACGTACACTAGCGCGATACTCGCAGTTGNTNACA
TATCGTCGTGCGATCTCGCATGTCACTATGAGCGGCTGCAGGTNTCTCCT
GCGTCAGCTCTATATAATGAGCGTACATATTATAATCACTACGCACCTGA
GTACGGACACATAGACTAGAACATATACAGAAGCCAAGCCGTGATTATGT
CTTCCTGTGTCGAAGTGGGGTCTTATGCGTGACCTGCGTGTTGTATGTAT
GGATGCTGCANTCCTTGTCGCGTGTCCTGCATNAGGCGCGGGATGTAGGT
GTGCGGTTCGCGGTTACGCACGCTAGNACTACATACGCATACGTATCATC
ATTAGATGACACCACATCACACAACATAGCGCGACATGAACATACCGACG
ATATACACACGTACAGCATACGCCCCCANTGAGCAGATACGCCGGGCAGC
CTACGGTGATGTCGTAAGGCATACTGTAAGACTCCAGGAGGAGTGCATAC
CATCGTGACATGCGCGTAGCGCTTGNGCGCGCGTTCCGTACCTAGCGACA
GAGCCGACTGCCTCGGGATTACCTACNCTCATCTCGCNTCGATCTGCAAC
TAACACAGTAACGACCTAACTATCTCGATGCGTAAGCTGTCGAGTACGCT
GTATGCTCGTGATGTAATACGAGAGCGTACAGAAGATACCCAGTGATGAG
GTCGTACAGGCATTCTCANTGGACGCCGAGTCTTCTCGATAACCGATTGC
CCCCATGTAACGTCGCGCTATTGTACGCTCACATACTGACGCGTGACNGA
ACTCATNCAGAGATCTAGCGCATCCGACAGCGTGCTTAGCGACGCAGCGT
GATCATAATCATAGAACGATANGATAGAGCGACTCGCNACTCGATCGTGG
CGTCAGTCGATAGTTGTTACTAGTGGATCTNGTAGTAGNCCACGATGNCT
CGCTGCTCGTGATCTCGCTGCAGTCACTGAATTATCACTGTTGTGTGGTC
GCAGTAGGAGCGCTACGTGTGCAGCNCNGTAGCGCGGACATGTGGTGCCC
GAGTGCTGATGTGTGAGGCGCANTGCTGTANCAGTGACTAGTACACTAGA
GAAGCAGCACACGACAGGCTGACTCTAGCGCGTGCTGACAGCGCNGAACT
CAGGATACACGACAGTTGAGCGTGCNGNCTNTCGACTGTGATGTCTGAGA
CGTTTCTGTAGCAGCGCGCACAGAGAGACTCAGCCGACTTNAGTAGACGA
CTGCATNATCGTAGCGACGGCATCATGTACGCAGTAGACAGNATCAGACA
GAGTTGCTACTAAGAGTAGAGTGANGCCTCNGACGTACAGNTCGATATCA
CGACATTCAGTACGGACTATCGTNATAGCTAGCNCNTGAGATTACCGTGG
GCGCGCGATGATACCCGACTACGTGCGCCTGTACCAGTACTCAGATNACG
TCGTCAGCGTGNCTGTGCAGCGCGCTGTCCGTCGCNTCGTCGCTGCNGCA
CTGTCTCTAGAGCTGGTCAGANTAGTCGATCNCTGTCATCGAGCGATCGG
NAGTCGTCTNGTAGTAGNTGACGGCTNGCGCTCGCAGGCATATGCNACCT
ACTGTAGGCGG
ACGATGCAGTGGGAGGCCTGGGGGNCGCCTGTTTCACACCTGCGGNGAAC
TANAGAAGTAACAACAACATTCTCTAAACTGGACAAGACCCTCCAGGCTA
GGGTGTGTTTACAGCTCCTCAGGTCCAAGAGCAGCTGCAGGTGATTCAAG
CCTCGTTACCCCTCAGTTAGGGGCTGAAGACCTGAGACTGTCCCAAAGAG
CAGGGCTACCTCATAGGACCCTTGCCCCTCCTGACCAGCTGACAGTTCTG
TCCTGTGTAAAGGCACCTTCCAGCTCCCTACAGCAGCTGACTCCACTAAA
AAGCTGGAATTCATGGTTCCTGTGCCTTTCAGTGTCAAAGCTTTAGATTT
GGTGACCAGAAGCTGGGAAGCCACCAGCAGAAGCTTGTAGCACTGGTACT
CTCCAGGGACTGGCTCTGAGCCCTCTGAGGACATCATAGACCTCACTGTG
CAGCCCCTGACTAGGGATGCAGGCTCCATCTTGGTACTGAGATCAGACAC
TCACTGTGAAGGATTGAGTGAAAACCCACCTTCCCAGGTCTGAGGGCTTT
CCCCACCCTCCTCCAGCAATGCTACAGTTGCAGGCTTACGGCGCACAGGA
NATAGCACTCCCAGAATTATAGATTCCCCTGTAATGTTTTTGTGTTTTTG
GGAGGCCGTCCTCCCTGTCTCTTTGCAACATATAGTTCAGGAGTGAGCCA
GGGGCCTTCCTGGCCTATAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_b11.g1 MSMg01no474_b11.g1 CHROMAT_FILE:
MSMg01no474_b11.g1 PHD_FILE: MSMg01no474_b11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:25 2005
         (240 letters)



>mm_chr5_34647015_34647654
          Length = 640

 Score =  427 bits (221), Expect = e-124
 Identities = 233/237 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctaaactggacaagaccctccaggctagggtgtgtttacagctcctcaggtccaagagc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaactggacaagaccctccaagctagggtgtgtttacagctcctcaggtccaagagc 260

                                                                       
Query: 61  agctgcaggtgattcaagcctcgttacccctcagttaggggctgaagacctgagactgtc 120
           | |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 261 acctgcaggtgattcaagcctcattacccctcagttaggggctgaaaacctgagactgtc 320

                                                                       
Query: 121 ccaaagagcagggctacctcataggacccttgcccctcctgaccagctgacagttctgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaagagcagggctacctcataggacccttgcccctcctgaccagctgacagttctgtc 380

                                                                    
Query: 181 ctgtgtaaaggcaccttccagctccctacagcagctgactccactaaaaagctggaa 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgtaaaggcaccttccagctccctacagcagctgactccactaaaaagctggaa 437


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)