BAC Information

Click to search

BAC

Clone NameMSMg01-474I19
Chromosome5 (Build37)
Map Location 7,070,492 - 7,070,872
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041208, EG435830
Downstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767, EG546855, Steap4, Sri, LOC433840
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474I19.T7 (MSMg01no474_i19.b1)MSMg01-474I19.TJ (MSMg01no474_i19.g1)
ACCAG556586AG556587
length727748
length of high quality
(start - end)
322 (321 - 642)390 (78 - 467)
definitionCHROMAT_FILE: MSMg01no474_i19.b1 PHD_FILE: MSMg01no474_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:03 2005CHROMAT_FILE: MSMg01no474_i19.g1 PHD_FILE: MSMg01no474_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXATGCGAGAGAGACCGCG
GAATTCTCANACTTTCAGAAAATAGCAAGATTGAGACAAGGAAAAGTTTT
TAAGCTGCTTTTATAAGTTCTGCCTACAAATCCCTTCCGGTTGTAGCCAG
CACCAGGTCATCTTGGGCACAGAGTTGGCAGACACCCCCAAGGTCCCTAG
AGGACTCTCCACACGATCGTAGGACCACTGGTAAGTGGAACACAACTTCT
GTTCCTCTAATCACACGGGACCTGAGACAGCACTAGGGAAGCAGAAAGCC
TGGCCTGACCATTNCATAAGTCCCTTCCTGTCAGTGCCAGCAACGGGTCA
CCTTAGGCTCAAAGTAGGAGGACACTTCTAAGGTACCTAGAGGACAGCAT
CTGAGGCAGACCCCGTTTGTTTCAGGCTCCAGACTTCCGGGCACCTTCCC
TGCCAGAGGAGAGGTGTCCACCCTGCCCAGGGAGGGATTTGCTGGAGCAC
CTGGGGGAACCATCTTGGTTCCTGGATCCCTCTGAGACTAGTCTGCACAG
GTGAGAGTGTGGACTACAGAAGCTAACAGCTTCTGGAACAGGCCCTATTT
CAGGCCTTCATCTTCTGCCAGGAGGAGGGTCCAAAATACTTATATCTGTG
CACCTTCCCTGCAAGAGGAGAGCTTGCCTGCAGAGAGTGCTCTGAGCACT
GAAACTCAGGAGAGATCTAGTCCTCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACAGAAACTCTCAAAAGATGAAA
CACTAATACAAATATTAATAAACACTTTAAGAAGCATTCAACAACCCAAA
CCATCAAGGAAATACAAATCAAAACTACATTGAGAATTCATTGCAACCCA
CAAAGGAATGCTTACCATCAAGAACAGAAGTGAGAACAAATGCTAAGAGG
TGTGTGGAGAAGTGAACACCAATACCCTGTTGATGAAATCCAAAATAGTT
TTTTTCACATACTTCTCCTCGTAATCCAAGGTGTACTGGAAGATGTAATA
ATATAATTCCCTGTTAGGTGTATTTTCTCTGTAAGATTAGCTGTGGAATA
TCTATTCTCTAGGTCTTTTCTGTGCTTTTGTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGNTNTNTNNNNNTTGTTNTTGTGTTTTTTTTTT
TTTTTTTTTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTGGTNTTTGTTTT
TTTTTNNTTGTTTTTTTGTTTTGGGTTNTTTTCTTGTGTTTGTTNTTTTT
GTTTTGGTTNTTTTTTTGGGTTGTCTTTGGTTGGTTTTGGTGTNGTTTTG
GTTTTTTTTTTTTTTTTTTGGTGTGTTGGTTGTTNGNTTTTTTGTTGTTT
TTGTTTCTTTCTTCGGTTTTTGTGTTTTTTTTCTCCTCTTTTCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_i19.g1 MSMg01no474_i19.g1 CHROMAT_FILE:
MSMg01no474_i19.g1 PHD_FILE: MSMg01no474_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:03 2005
         (390 letters)



>mm_chr5_7070292_7071081
          Length = 790

 Score =  675 bits (349), Expect = 0.0
 Identities = 373/381 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaaactctcaaaagatgaaacactaatacaaatattaataaacactttaagaagcat 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 acagaaactctcaaaagatgaaacactaatacaaatattaaaaaacactttaagaagcat 260

                                                                       
Query: 61  tcaacaacccaaaccatcaaggaaatacaaatcaaaactacattgagaattcattgcaac 120
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 tcaacaacccaaaccatcaaagaaatacaaatcaaaactacattgagagttcattgcaac 320

                                                                       
Query: 121 ccacaaaggaatgcttaccatcaagaacagaagtgagaacaaatgctaagaggtgtgtgg 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 321 ccacaaaggaatgcttaccatcaagaacagaagtgagagcaaatgctaagaggtgtgggg 380

                                                                       
Query: 181 agaagtgaacaccaataccctgttgatgaaatccaaaatagtttttttcacatacttctc 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagtgaacaccaatagcctgttgatgaaatccaaaatagtttttttcacatacttctc 440

                                                                       
Query: 241 ctcgtaatccaaggtgtactggaagatgtaataatataattccctgttaggtgtattttc 300
           | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 cccgtaatccaaggtgtactggaagatgtaataatttaattccctgttaggtgtattttc 500

                                                                       
Query: 301 tctgtaagattagctgtggaatatctattctctaggtcttttctgtgcttttgtgttgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctgtaagattagctgtggaatatctattctctaggtcttttctgtgcttttgtgttgtt 560

                                
Query: 361 gttgttgttgttgttgttgtt 381
           |||||||||||||||||||||
Sbjct: 561 gttgttgttgttgttgttgtt 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)