BAC Information

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BAC

Clone NameMSMg01-474K03
Chromosome5 (Build37)
Map Location 31,156,054 - 31,156,387
singlet/doubletsinglet
Overlap geneMapre3
Upstream geneLOC100034662, LOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5
Downstream gene1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474K03.T7 (MSMg01no474_k03.b1)MSMg01-474K03.TJ (MSMg01no474_k03.g1)
ACCAG556650AG556651
length640762
length of high quality
(start - end)		69 (71 - 139)334 (70 - 403)
definitionCHROMAT_FILE: MSMg01no474_k03.b1 PHD_FILE: MSMg01no474_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:09 2005CHROMAT_FILE: MSMg01no474_k03.g1 PHD_FILE: MSMg01no474_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATAATTGGGCGTAAACACTCCTATTTCAGAAAGCGCGGGAATCAGCT
GATGCCGAAAAACTCATCGATAGCTCCCTGAGTCAGATGAACACTTCTCT
TCTCCCTCCCTCTCTCCCACTTCCCACTGTATTGCTCAAGCCAGACTGTA
TCTCTTCTGGTGGTTCCCAACTCCCAGGTCACCATGTTAGTACCAATCAG
CCAGCACATCTAAGCCAACGATCTCCTGCTTGATTCAAGAACCAGGCCCA
AAGTGTGCCTTGCCCCACTCATCCTCAAAAAAAAAATTTTTTTTCCCAAC
AAAAAAAGGGGGGTTAAAAAAGCTTAACGCCCTCCCCCAAACCCGGTTTC
AAAAACCCCAATCATCTTGGCCTTTTTCCTTTGAACCCTCTCCCCTCTTT
TTTATTTATTCTTGGTATTTAAACTCCAATTATCAAGACATTGTTTTTAT
AATACTGCCTCCTATATCTTATTTTCCTCCTCTTATATATATTTTTCCTC
ATAATACTTTTCCACTCATTCCTTCTATCTACATTTTCTCTTCTTTTTAA
CTCCCAATTCATCCACATACCTTCATTTTTTATCTCTATCACAATATTTC
TTCATTCCTTTCTCTCTACATGTTTCTCCAATTTTTATTT

ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCAGAAATTCTGTGGATCCTGCCGAAATAGCTCCACTT
CTGACATGGGGCTATGCCCATTGTCCCTGGGCTACCCGTTCCTGCTCAGA
GCCAGGGGGCTGAAATCACCTGTCTGGAAACACTGCAAAATTGCTACCCA
GGCCCCGTTTGGCTCATACACCCATGCTTTTCTGGGGATGCATGGAGGTA
GTGGGTGCCAGTAGGGATGTAGGGCTCTGAGGGGCACAGAGACAGAGGGT
TCTGCCAGCGGGTCACTTTTTCCTGGCATGCCTAGCCAATCACCTCCTTC
TCATGGCTGAAGGAGGACATGACTCACAGAGAGGTTGGGTGTGGGAAAGC
TGGGTTAGTGAGAGCAGATGTGGTAAGGGAGTGATTGTTCTCATGCCTGC
TCCAAACAGTATTTCTACTCTCCTCTCTTCTCAATCTATTCCTATATCCA
CACACTAAAATACTCCTCAATTCTTCTTACCATTTCCATATCCTCTCCTT
TCCCTATTATCCTTCCTTTCCTATCTCCCATCTCCCAACTCTACTACTCT
CTTTTACCTCTTTCTTCTCCTTAAATATTTCTCTCCTCTCATCTTTTTAT
ACCTCCTTCTCCATCCCCTTTTCTTTCCCTCACATTTGAGAACCCTCCTA
CTTACCTCCATTACTTCACTAACGTCTTCCGTATTCTTATATTTTCTCCG
TTATACCCCGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_k03.g1 MSMg01no474_k03.g1 CHROMAT_FILE:
MSMg01no474_k03.g1 PHD_FILE: MSMg01no474_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:09 2005
         (334 letters)



>mm_chr5_31155854_31156587
          Length = 734

 Score =  594 bits (307), Expect = e-174
 Identities = 327/339 (96%), Gaps = 10/339 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgtggatcctgccgaaatagctccacttctgacatggggctatgcccattgtccctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 ttctgtggatcctgccgaaatagctccacttctgacatggggctatgcccattgtccctg 475

                                                                       
Query: 61  ggctacccgttcctgctcagagccagggggctgaaatcacctgtctggaaacactgcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggctacccgttcctgctcagagccagggggctgaaatcacctgtctggaaacactgcaaa 415

                                                                       
Query: 121 attgctacccaggccccgtttggctcatacacccatgcttttctggggatgcatggaggt 180
           ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 414 attgctacccaggccccgtatggttcatacacccatgcttttctggggatgcatggaggt 355

                                                                       
Query: 181 agtgggtgccagtagggatgtagggctctgaggggcacagagacagagggttctgccagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 agtgggtgccagtagggatgtagggctctgaggggcacagagacagagggttctgccagc 295

                                                                       
Query: 241 gggtca-----ctttttcctggcatgcctagccaatcacctccttctcatggctgaagga 295
           ||||||     |     |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gggtcacaaagc-----cctggcatgcctagccaatcacctccttctcatggctgaagga 240

                                                  
Query: 296 ggacatgactcacagagaggttgggtgtgggaaagctgg 334
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ggacatgactcacagagaggttgggtgtgggaaagctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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