BAC Information

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BAC

Clone NameMSMg01-474K06
Chromosome5 (Build37)
Map Location 128,538,845 - 128,539,124
singlet/doubletsinglet
Overlap geneTmem132d
Upstream geneTmem132c, Slc15a4, Glt1d1
Downstream geneFzd10, LOC100040398, Piwil1, Rimbp2, Stx2, Ran
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474K06.T7 (MSMg01no474_k06.b1)MSMg01-474K06.TJ (MSMg01no474_k06.g1)
ACCAG556656AG556657
length734737
length of high quality
(start - end)
77 (67 - 143)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no474_k06.b1 PHD_FILE: MSMg01no474_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:10 2005CHROMAT_FILE: MSMg01no474_k06.g1 PHD_FILE: MSMg01no474_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAATTTGGGCGTAAACGATCACATATTCAAAATCCGCGGAATTCCAAC
TGCATTTCAATCTAGGGGGAGGTGGTCTTGATCTCTACTGGACATCTTAA
CACCATAAGAGGAGAGGCTGGCTGAGCACAGAGCCAGTTTGAAGAAGTGG
GAGAAGNAAAAGCCCCCGAATTTTTTTTCCCAANNCNNAAGCATCCTTTC
AGCCCCCTGGGATCCAGTGGTTCCCTGAACCTGGGTATGTCTTAAACCCC
AAGCCTTCCATTGAAGGAGGCCCCCTTTTCCGTTTGCCCCAAAAAACGTC
CCCCCTTTTCCACCAGGGATTTAAAAAGGGAAACCTGGGAAACCTTTTTT
CTTTTCCCCAAAATAAAAAAAAAAACAAAATTGTGTCCCCCCAAACACCC
CAACCCCCCTCTGCGTTGTAAAAAAATACAGTACTTGGGCCCCTCTTTTC
TTTCCGGGGTCAGAAAAAACTCGGCACAAACTATTTTCTCTACAATACTC
CTTCTTCCTCCCCTTGTGGTGCTTCCTCACTTATTAACAAACACTCTCCT
CTCTCACTACACCCCCCCCCTCTCCTATTTATTTTACAGCCCGCTCTGTT
CTCTTTCCTTCTCCAAACTCTAAACTTACTATAACCCCTTCTTCCCTCGC
CTTCCATACCATAATCCCTCATACAACCCTCATATTAATCAATGCCCTTC
CCTCCCCACCTCCCATTCCACCTCTCTTCCCCTT
CATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATCTTACATTCTCTCTCATCTCTTCAATAAA
ACTCTGGTATCATCAGGAAGTCTTATGTGATATTTGCTATCGAAATATGA
GAAATGTGAAAAAGTATCAAAGAGATACAAATGCTGGCCATATTACTTTC
GCTTAGGCCTTACTACTAGCAGCATTTTAGTGGTATTTATTTAAAACTGA
CTAAGCTTTCACACACCCAAAGATTTTACAGAATGGCTTAGGTAGAAAGT
ATTGGTGATACATGTTGTTTTTATATATATATATATTGGGAAATACTCAT
AAATGATATTGCTATACATTCCTGGAACCCCACTTCTGGAAGGAAATTAA
ATCAGTACCTGAAATGCCCAGTTCATGCAGCACAATAGCCAAGGTATAGA
AACAGTATAAGCTCTTATCAGTGAACCAGTGAGGAATAAAAGGAATACTA
TTTAGCCTTCTACAAAGCAAGGAAAGTCTGCCATATATGGAAATATTGAG
GTTCTAGCTTCATTTATGTCGCTGCATATCCATGCCCTGCCTCTTAGCAC
TTGTGGGATTAATCATGTTTATCTTTTTCCCCATCTGCAAGGCTACAGTC
CTTTTTTTTTCTTTTTTAGAGATATATCCCCTTTTTGTCCCATCTTGCCT
CCTCTCTCCTTTCCTCCTTTATCCGCTCCTCTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_k06.g1 MSMg01no474_k06.g1 CHROMAT_FILE:
MSMg01no474_k06.g1 PHD_FILE: MSMg01no474_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:10 2005
         (284 letters)



>mm_chr5_128538645_128539326
          Length = 682

 Score =  518 bits (268), Expect = e-151
 Identities = 278/282 (98%), Gaps = 2/282 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acattctctctcatctcttcaataaaactctggtatcatcaggaagtcttatgtgatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 acattctctctcatctcttcaataaaactctggtatcatcaggaagtcttatgtgatatt 421

                                                                       
Query: 61  tgctatcgaaatatgagaaatgtgaaaaagtatcaaagagatacaaatgctggccatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgctatcgaaatatgagaaatgtgaaaaagtatcaaagagatacaaatgctggccatatt 361

                                                                       
Query: 121 actttcgcttaggccttactactagcagcattttagtggtatttatttaaaactgactaa 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 actttcgcttaggccctactactagcagcattttagtggtatttatttaaaactgactaa 301

                                                                       
Query: 181 gctttcacacacccaaagattttacagaatggcttaggtagaaagtattggtgatacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gctttcacacacccaaagattttacagaatggcttaggtagaaagtattggtgatacatg 241

                                                     
Query: 241 ttgtttttatatatatatatattgggaaatactcataaatga 282
           ||| ||||||||||||||||  ||||||||||||||||||||
Sbjct: 240 ttggttttatatatatatat--tgggaaatactcataaatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 682
Length adjustment: 9
Effective length of query: 275
Effective length of database: 673
Effective search space:   185075
Effective search space used:   185075
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)