CCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAAAAATATGCTTCAGGTGAACAGCTCTCTGCTAACTCCTGAA
CTCCTGCAGTGTAGCAGCACACGTGGGAAGGTTGAGCAGCCTTTGACCGG
ACTTCTAGCTTTGGCCCTGTCACACAGCTGGGCCATCAGTCCACTGCTGT
AGGGAGAGGCATATTTTGGATAGGACAGATATATTTCTTGTATATCTCTG
TTGCCATGAAGCATTCAACGAGTACTTACTTTTGAAGATATTATTTAATC
TAGGAACTATAGGTTATTCTGCTCATTTTATTCAACTTAAAATTTCAGCA
ATGAAAACTAAATATTAATCATGATTTTACTTCTAGTGGTTTGCAGTAAT
TACAAAGAGAGTTGTATAAAAAAAACCATGCAATTTTAAACTCATTGTCT
TTATTATATCAATAATAACTATTATCTCCCTTTATCCATTTAAGTAAAAT
GTATTAAATATATGTTAAGAGCTGACTTTTGTGGCTTTGTGAGCTAGTTT
CCGACTGGTTTCCCACTGCCTTGCATTGCTGTATTCATACAGCAAGTAAG
TATGGCGAGGTTAATGGGGCCAGTAACTGGCAGGTAACTCTGCCACATTT
GCTATGATTTCCTAAGACAGAAGAAGAGATTCCTCTTGGGATTCCCCCCA
ACCGTATCCAGGGACCGTGTGTAATCCACATAAAGGCGATCCACCTTGTT
CCCACCGGCGAGTCTGGTAG

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTAAACATTGTTATCTTATAA
ATATGATGAGGCAGCTGCACTTGTGAAACTTCAGCAATGTGGCACCTTAA
ACAAGACCTGAACAATGAAAACGCCAGTTTATCTGTCAACATAAATGGTG
GAAAATCCTACCTACCCACCTCTAGATGAAGAGCTCCAGCCAATTACAGA
CTACTGAGACGGAGAATTAGTATTCTCCAGGGATGATCTCCTTAAATAGT
TATCCAATGCTACGTGGTCAGCCGCAGCATCATATACATACAAGCAATAT
TAAATAGGTTAATCATCAGATTGCATTTATACTTGTATTCTCACATGCAT
ATATATTTAATAATAAAAATTATTAATCCATAAATTTGAGAGGGAGCAGA
AGAGAAGGACATGCGAGGGCTTGGAGGGATAATAAAGATGGGGTAAATGC
TGTCCCCTTTTTCCCCCTTTCCCCTCCCCCTTCTTTCTTCCCTCTCTTCT
TTCTCTCTTCCCCCCTCTTTTCTTTTTTCCTCCCCCCTTTTTTTTTTTCC
CTCCACCCTTTTTCTTCCTCCCCCCCCCCTTCTTTTTTTTTTTTCCCTTC
CCTCCCTCCTCTTTTCCCCTCCCCTTTTCCTTTTTTCCTCCCCCCTCCCC
TTTTTTCTCCCCTTCCTTTTTTTTTCCCTTCCCCCTTTCCCTTTTTATTT
CCCCCTCCCTTTTTTTCTCCCCCCTTCTTTT

Query= MSMg01no475_e18.b1 MSMg01no475_e18.b1 CHROMAT_FILE:
MSMg01no475_e18.b1 PHD_FILE: MSMg01no475_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:01 2005
         (485 letters)



>mm_chr5_49668774_49669654
          Length = 881

 Score =  861 bits (445), Expect = 0.0
 Identities = 471/481 (97%), Gaps = 4/481 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaacagctctctgctaactcctgaactcctgcagtgtagcagcacacgtgggaaggttga 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 gaacagctctctgctaactcctgaactcctgcagtgtagcagcacacgtggggaggttga 622

                                                                       
Query: 65  gcagcctttgaccggacttctagctttggccctgtcacacagctgggccatcagtccact 124
           |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 gcagcctttgaccgaacttctagctttggccctgtcacacagctgggccatcagtctact 562

                                                                       
Query: 125 gctgtagggagaggcatattttggataggacagatatatttcttgtatatctctgttgcc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgtagggagaggcatattttggataggacagatatatttcttgtatatctctgttgcc 502

                                                                       
Query: 185 atgaagcattcaacgagtacttacttttgaagatattatttaatctaggaactataggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgaagcattcaacgagtacttacttttgaagatattatttaatctaggaactataggtt 442

                                                                       
Query: 245 attctgctcattttattcaacttaaaatttcagcaatgaaaactaaatattaatcatgat 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcctgctcattttattcaacttaaaatttcagcaatgaaaactaaatattaatcatgat 382

                                                                       
Query: 305 tttacttctagtggtttgcagtaattacaaagagagttgtataaaaaaaaccatgcaatt 364
           ||||||||||||||||||||||||||||||||||||||||||  |||||||  |||||||
Sbjct: 381 tttacttctagtggtttgcagtaattacaaagagagttgtat--aaaaaac--tgcaatt 326

                                                                       
Query: 365 ttaaactcattgtctttattatatcaataataactattatctccctttatccatttaagt 424
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 325 ttaaactcattgtctttattatatcaataataactattatctccctttattcatttaagt 266

                                                                       
Query: 425 aaaatgtattaaatatatgttaagagctgacttttgtggctttgtgagctagtttccgac 484
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaatgtattaaatatatgttaaaagctgacttttgtggctttgtgagctagtttccgac 206

            
Query: 485 t 485
           |
Sbjct: 205 t 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 881
Length adjustment: 10
Effective length of query: 475
Effective length of database: 871
Effective search space:   413725
Effective search space used:   413725
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)