BAC Information

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BAC

Clone NameMSMg01-475F22
Chromosome5 (Build37)
Map Location 83,157,970 - 83,158,373
singlet/doubletsinglet
Overlap genenone
Upstream geneLphn3, EG433912
Downstream geneLOC100039434, Srd5a2l2, LOC100039608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475F22.T7 (MSMg01no475_f22.b1)MSMg01-475F22.TJ (MSMg01no475_f22.g1)
ACCAG557212AG557213
length769771
length of high quality
(start - end)
405 (64 - 468)356 (77 - 432)
definitionCHROMAT_FILE: MSMg01no475_f22.b1 PHD_FILE: MSMg01no475_f22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:07 2005CHROMAT_FILE: MSMg01no475_f22.g1 PHD_FILE: MSMg01no475_f22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACACCGCGGAATTCTAGGT
CAGTCTCCTCTACAGGGTTTTTACACAGGACCATATATCAGAGGACTTCT
TATGTAATAATAATGAAACACAAACTTAATAAAAAATGATGTATGTATAC
TGTAACTTGCGCATACACACACACTATTTTTTTTCAGATCCTAGAATTAA
ATGAATGTGAAAACCGATCGGCAAAAGGAAAGAGGGAAGCATTCCGATCA
GCCTGAGGGGTATGCAAAGTTTTTTTTTTTATTCTTGTGATTACAATATA
ATTACATTTCTTCCCTTTTTTTCCTCTTTCTAACCACTTCCATATCTCCC
TCATTGTTCTCTTTCAAATTGCCTCCTTCATCATTAATTGTTTTTGCATA
TATATACACATATGTTCTAACTATCATCTGCTCAGTCTATATGATATTAC
CTGTAGATATGTTTTTCAGGGCTGACCCTTTCAAATGGGACAACCAATTG
GCATATGCTTCCCTGGAAAAGATGATCTCTCTTACTGACAGTAACAGTTG
TCTTGGTTCTTTGTGTAAGGTTGAGGCCTCTTGGGCACATCTTTCTTCAC
TGTGGGAGGTTTATTGTGGTGGCCCAAATTAGTTCCCGACTGGACAGTCC
ATTTATTGTTTTTTACTGCCTCAATTTCTACCCTAATATTATTTATAATA
TAACCTGGGCTTCCCTCCCCCCCTCTTTTCTCTGGCTTTTCTTAATCTTT
TCCCCCTCCTCTTTCACAG
NCCCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAGCTAAAATAAAAGAGCTAT
GGCTAGATATTCCCATGGAGGCAGTTGGATGAATGTTATTATTGAGTAAT
GGCAATACGTGGTTCTAACAGTAGTAGTGTTTCTTTTATGAAATTGGCAA
CCCTTATGTTTAGTTTGTTAATATTTATAATTATATCATTTTCATGGATA
TTTTTGTTTATTGAATAGTACTATCCTTCCTTATCTCTCCTGATTAGTTT
AAAATCTATTCTTTCATATACTAAAACAGCTATGCTTTCTTTTTCCATAT
TTCTATTTTATTTTATTTTTTTTTCTTTCCATTTTTTATTACGTATTTAG
CTCATTTACATTTCCAATGCTATACCAAAAGTCCTCCATACCTCCCCACC
TCCACTCTTCTTTTCCCCCTCTTTCTCCCTCCTTTTCCTTTTTTCCCCCC
TTTTTTCTTCCCCCTCTATCTTTCTTCGCTTCCCCCTTCCCTCTCCTTCT
CCCCCCTCCCCCTTTTCTCTTCTTTCCTCCCTCCCATTTTCCCTCCTTCC
TTTCCGTCTTTCCTTCCCCTCCCCCTCCCTTTTTCCTTTTCTTCTCCCCT
TCCCTCTCCCTTTTCCTACCCTCTTTCCTCCTTTTTCTTCTCTTTCTTCC
CCTCCCCTTTCTTTTTTCTCCCCCCTCCCCCTTTTTCTTCCTCTTCCCCC
CCTTTCCTCCCCCTCCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_f22.b1 MSMg01no475_f22.b1 CHROMAT_FILE:
MSMg01no475_f22.b1 PHD_FILE: MSMg01no475_f22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:07 2005
         (405 letters)



>mm_chr5_83157770_83158574
          Length = 805

 Score =  739 bits (382), Expect = 0.0
 Identities = 400/406 (98%), Gaps = 3/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggtttttacacaggaccatatatcagaggacttcttatgtaataataatgaaacacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggtttttacacaggaccatatatcagaggacttcttatgtaataataatgaaacacaa 260

                                                                       
Query: 61  acttaataaaaaatgatgtatgtatactgtaacttgcgcatacacacacactattttttt 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttaataaaaa-tgatgtatgtatactgtaacttgcgcatacacacacactattttttt 319

                                                                       
Query: 121 t-cagatcctagaattaaatgaatgtgaaaaccgatcggcaaaaggaaagagggaagcat 179
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttcagatcctagaattaaatgaatgtgaaaaccgatcggcaaaaggaaagagggaagcat 379

                                                                       
Query: 180 tccgatcagcctgaggggtatgcaaagtttttttttttattcttgtgattacaatataat 239
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 380 tccgatcagcctgaggggtatgcaaagtttttttttt-attcttgtgattacaatataat 438

                                                                       
Query: 240 tacatttcttccctttttttcctctttctaaccacttccatatctccctcattgttctct 299
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tacatttcttcccaatttttcctctttctaaccacttccatatctccctcattgttctct 498

                                                                       
Query: 300 ttcaaattgcctccttcatcattaattgtttttgcatatatatacacatatgttctaact 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 499 ttcaaattgcctccttcatcattaattgtttttgcatatatatacacatatattctaact 558

                                                         
Query: 360 atcatctgctcagtctatatgatattacctgtagatatgtttttca 405
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atcatctgctcagtctatatgatattacctgtagatatgtttttca 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)