BAC Information

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BAC

Clone NameMSMg01-476A19
Chromosome5 (Build37)
Map Location 125,821,932 - 125,822,169
singlet/doubletsinglet
Overlap genenone
Upstream geneSbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2, Dnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1
Downstream geneUbc, Dhx37, Bri3bp, Aacs, Tmem132b, EG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476A19.T7 (MSMg01no476_a19.b1)MSMg01-476A19.TJ (MSMg01no476_a19.g1)
ACCAG557732AG557733
length778761
length of high quality
(start - end)
246 (67 - 312)236 (73 - 308)
definitionCHROMAT_FILE: MSMg01no476_a19.b1 PHD_FILE: MSMg01no476_a19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:02 2005CHROMAT_FILE: MSMg01no476_a19.g1 PHD_FILE: MSMg01no476_a19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGCATCCGCGGAATTCC
AGCTGTCCCAGAAGCTGAGGCTGGGAGATCAGAAGTTCCAGGCTAGCCTG
GGCAACTTGACTGAGACCCTGTCGCAAAATAAGGAGTAAAGAGAGGACCT
GGGGTGCAGTCAGTGACAGAGGACTTGCCTAACACCCACAAGGTCCTGGG
TTCCACCCTCAGGATCATAGAGAAGAGAAAAAACATCAAATGGTAAAGTC
CCCGCAGTCGTGGCGCTGAGACAGTGATCACTGCTGGAGAAGAGAAGCTT
CGAAACAAGTGGTTTCTGGTTGAGCCATTCTGGGAGTTGTCTAGATTCGC
TGATGATGCCCTACTCACATGCAGATCAATCTCCATAGACTCAGGAGAAG
TCACCAGCTCTCTCACGCAAGGGTAGGGTATCACTGGAATCTAGAACTCA
CTCCCTCAGACTCCTGCCTTGCGCATTCCCCTTTCTTTCTTTTTTCCCTT
TTTACCTCTCTCCCTTCTCCCTTCTTCTTCTCCGCTTACTTTCTCTTTTT
CTCTTTCCTTTCCTTTTTTTTTCCTTCCTCTCTCTTCCCTTTTCTCACCT
TTTCCTTTTCCCTCTCCTCTCTCTTTCCTTCCTCTTTCCCCCCTTTTCCT
CCCTTCTTTTTTTTTTCTTCTTTTTCCTCTCTCTTTTCTCTCTCTTTTTC
CCTTTCCCCTTTCCCTTCTTCTTTTTTTTACCCTTCTCCCCATTTTTTTC
TGTTCGCTACTTTTCCCTCCCCTTCTTN
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTACCAGCGAACATCTGTGNCCCTCGAGGCCTTAAGCATACCCTCCAC
TCAAAACTCCAGGCCCCAGACACGCGCTGGGCCCCTGACTCCATCCAGGA
ATGTGTTCGAGGGGCTTATCAGACTGCCTGGCGGCTATGCTCTCTGCTGA
CTCTTCCTTATCACCCAGAGACACCACCAGCTCAGTTGAGCTCTTTTATG
CGTTCTTTGGCCATGAACCCCACTCAGGATACCAGCAGGGTGGTAGGGAC
TCTCTTTCTTGGCTCNGTCCCAGTGCCCAGTTAGCTCGTTCTCAGACCAC
AGCCAGAGCCTTTAAGCCTTTAATTCTAAATGCTTCGTGTTACAGCCAAA
ACAAAAAAAAAAAAAAACCCTGAGGCATGGGGTGACTTCCTTCCTCAGTG
AGGCCAAGGCCTGCATTCCACTCAGGACACCAAAAGTGGATACGGAGCCG
ACAAAACCCAGCCCCACACCTGACAAAATCGAGTCCCAGCTCCTGGTAAA
ACCCATAACGACCGCTCTTGATGCACCTCTTCCCCTTTATGCACCTGACT
TAGTCCCCCTCGTGCCCCACACCCTTCCCCTGAGATCCCCCCTTTTTTTT
TTTTTTTTTTGCCGCTTTTCCCCCCCCATCTGCATTCCCACTTATCTGCC
CCACCCTCTTTCTGTTTTATTGCTCCCACCCTGTCACTCCGCTCTTCCCT
TTTCTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_a19.g1 MSMg01no476_a19.g1 CHROMAT_FILE:
MSMg01no476_a19.g1 PHD_FILE: MSMg01no476_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:02 2005
         (236 letters)



>mm_chr5_125821732_125822367
          Length = 636

 Score =  433 bits (224), Expect = e-126
 Identities = 234/238 (98%), Gaps = 2/238 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctcgaggccttaagcataccctccactcaaaactccaggccccagacacgcgctgggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctcgaggccttaagcataccctccactcaaaactccaggccccagacacgcgctgggc 260

                                                                       
Query: 61  ccctgactccatccaggaatgtgttcgaggggcttatcagactgcctggcggctatgctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctgactccatccaggaatgtgttcgaggggcttatcagactgcctggcggctatgctc 320

                                                                       
Query: 121 tctgctgactcttccttatcacccagagacaccaccagctcagttgagctcttttatgcg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 321 tctgctgactcttccttatcacccagagacaccaccagctcagttgagctcagttatgcg 380

                                                                     
Query: 181 ttctttggccatgaaccccactcaggataccagcagggtggtagggactct--ctttc 236
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 381 ttctttggccatgaaccccactcaggataccagcagggtggtagggactctgtctttc 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)