BAC Information

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BAC

Clone NameMSMg01-476F24
Chromosome5 (Build37)
Map Location 119,519,015 - 119,519,385
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxw8, Hrk, Tmem118, 2410131K14Rik, LOC665162, Thrap2, LOC100039488
Downstream geneEG665194, LOC100039529, LOC100039542, Tbx3, EG433945, Tbx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476F24.T7 (MSMg01no476_f24.b1)MSMg01-476F24.TJ (MSMg01no476_f24.g1)
ACCAG557982AG557983
length866845
length of high quality
(start - end)
375 (41 - 415)204 (71 - 274)
definitionCHROMAT_FILE: MSMg01no476_f24.b1 PHD_FILE: MSMg01no476_f24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:28 2005CHROMAT_FILE: MSMg01no476_f24.g1 PHD_FILE: MSMg01no476_f24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTTGTAGATCTTCTATCACAATAGGGATTAGAAAAGGCTGGGAATGTTCC
ACTCAAGTCTGTCCTCTCCCCAGGGTTCATGACCTGCTAGCTATACACAG
CAGGCAAGTAGATGGTTGTGTTAGAAAGGAGCCAAGAAGGGGCTGTGGGG
AAGGAAAATGCTTGGTATACAGGAGTGGGGACCTGAGTTTGCATCTCCAG
TTCTCACTAGAAGCTGGATACGGCTGTTCACATCTGTAACCTCAGCTCTG
GGTGGATGGACGCAGAAGGAGCCATAGAATTCACTAGCCAGTCAGTCTAG
GGGAACCAGTGGACTGCTAATCCAGTAAGAGTACCCAGACAAAGAAGAAG
AAGAAGAAGAAGAAGAAGATGATGAATAAGACTATCTATTCCCCCCCTTT
TTTCCCCCTTTATTCCCCTCCCTCTCCTCTTTCTCCCTTACCGTTATTCT
ATCTCATTCCGCTCTTTCCTCTCCCCCCCCCTCCTCCCCCTTCCTTCTTT
TTCTCCCTCTCATCCTCGTCCTCCTCCTATTCTTTAATTATCCCCTTATT
TTTCTTTTTTTTCCCCCCCCCCCCCCTTTTCTTCTTTTTTTATTCCTTTT
CCCCCTCTCTTTATTATCCCTCCCCTTATTCTCCCTTCTCCTCTTATTTC
TCTCTCTCTCTTTTTTTTACCCTTTTTATTCCCCCCTTCTCCCTCTTCTC
CATTTCTCCCCACTCTCGCCCCTCCTTTCCTCCCTCTCTTTTATTTTTTC
CCCCCCTTTCTCGCTTCATTTCTCCACCCCTTTCTTTTTCCTCCTCTTTT
TACTCCTTAATCTTCN
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTCAGACATACCCAGGAGGAAACCCCTACAGTCATAGACTCT
CCCTGATCCTTAGCTGTCCATCAGTATCTTTTCATGTGACCTTCTCATGA
TTTGGATGGCCGTGTCCCCCAACAGGCTCATACATTTGAATTTCTGGTCC
CTGTGGGTGAAACTGTTTGGGAAGGACTAGGAGGCGTGACCTCGTTGGAT
GATATGTCCCTAGGGACAGACTTAGAGGTCTCAAAAGCTCATGCTATTTC
TGTGCGCTCTCTCACTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTTTCTTTCTCCTTTTCCCTCTCTCTTCCCGTGTCTCGATCTAACACT
CTTTTTTATTTCCACCCTATGTCCTTGCTTTTTGTTTTCTCTTTCCCCCC
ACCAATACCCCCCCCCCACTTTTTTTTTCTACTCCTTTTTTTCGCTTTTT
TCTTTTCCCCTCTTTTCCTTATAGTGTGTTTTTCATTTCTTTACTTCTCT
ACTCTTCTCCCCCTCTCCTTTTTCCTCCCTCTTATCCTCACCCACTTGTT
CTTTTCCTATTTTCCTCTATATTTACCCTCTTTCCCCTTGTGGCCACCTC
ATCCACCACNCTCTCTCGTCCCTGACCTCCCTTCCTCCTCCTCTTCTATT
CTTGTATTCCCCCCTTCCTTTCTTTTTTTTTTCTCTAGTTCTTTTTTTCC
TCCTCATTTCTTNCTTATACCTTATCCACTCCTCTTCTTTTCCCCTCTTT
TCGCACTCTTACCCCTCGCCCCCACTTTTTCTTCTTTCTCTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_f24.b1 MSMg01no476_f24.b1 CHROMAT_FILE:
MSMg01no476_f24.b1 PHD_FILE: MSMg01no476_f24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:28 2005
         (375 letters)



>mm_chr5_119518811_119519585
          Length = 775

 Score =  648 bits (335), Expect = 0.0
 Identities = 362/371 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgtagatcttctatcacaatagggattagaaaaggctgggaatgttccactc 64
           ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccctgtagaccttctatcacaatagggattagaaaaggctgggaatgttccactc 264

                                                                       
Query: 65  aagtctgtcctctccccagggttcatgacctgctagctatacacagcaggcaagtagatg 124
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct: 265 aagtctgtcctctccccagggttcatgacctgctagctacacacagcaggcaagcagatg 324

                                                                       
Query: 125 gttgtgttagaaaggagccaagaaggggctgtggggaaggaaaatgcttggtatacagga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gttgtgttagaaaggagccaagaaggggctgtggggaaggaaaatgcttggtatacagga 384

                                                                       
Query: 185 gtggggacctgagtttgcatctccagttctcactagaagctggatacggctgttcacatc 244
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 385 gtggggacctgagtttgcgtctccagttctcactagaagctggatatggctgttcacatc 444

                                                                       
Query: 245 tgtaacctcagctctgggtggatggacgcagaaggagccatagaattcactagccagtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgtaacctcagctctgggtggatggacgcagaaggagccatagaattcactagccagtca 504

                                                                       
Query: 305 gtctaggggaaccagtggactgctaatccagtaagagtacccagacaaagaagaagaaga 364
           ||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 505 gtctaggggaaccagtgaactgctaatctagtaagagtacccagacgaagaagaagaaga 564

                      
Query: 365 agaagaagaag 375
           |||||||||||
Sbjct: 565 agaagaagaag 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)