Query= MSMg01no476_i24.b1 MSMg01no476_i24.b1 CHROMAT_FILE:
MSMg01no476_i24.b1 PHD_FILE: MSMg01no476_i24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:42 2005
(249 letters)
>mm_chr5_90015728_90016376
Length = 649
Score = 439 bits (227), Expect = e-128
Identities = 242/247 (97%)
Strand = Plus / Minus
Query: 1 ggtaactaagttggacaattgagtgtccacagaggctgctctgagatagccatgacagca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ggtaactaagttggacaattgagtgtccacagaggctgctctgagatagccatgacagca 388
Query: 61 tgggctgtgtgcagattactttgtgacaaaaccataattaaagccaaaagtatctcaagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgggctgtgtgcagattactttgtgacaaaaccataattaaagccaaaagtatctcaagt 328
Query: 121 gtgtctgactcgtcacttctattataattgttcaccttgtcatttctcaagcgtgtgagg 180
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 327 gtgtctgactcgtcacttctattataattgttcacctcgtcatttctcaatcgtgtgagg 268
Query: 181 tgtcctctgctgatgtacatgctgagcctggagttggttaaaataagtctttaagccagt 240
||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgttttctgctgatggacatgctgagcctggagttggttaaaataagtctttaagccagt 208
Query: 241 ggttttc 247
|||||||
Sbjct: 207 ggttttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no476_i24.g1 MSMg01no476_i24.g1 CHROMAT_FILE:
MSMg01no476_i24.g1 PHD_FILE: MSMg01no476_i24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:42 2005
(180 letters)
>mm_chr5_89876052_89876633
Length = 582
Score = 310 bits (160), Expect = 5e-89
Identities = 176/182 (96%), Gaps = 2/182 (1%)
Strand = Plus / Plus
Query: 1 agctagggagatggctggtctaaggtagtgtggagtacttcctcactct--aagagtagt 58
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agctagggagaaggctggtctaaggtagtgtggagtacttcctcactcttcaagagtagt 260
Query: 59 gaaggcagcttcacaatcccttgtccttgttagctttcctctagggtctgggatacaaac 118
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gaaggcagcttcacaatccctcgtccttgttagctttcctttagggtctgggatacaaac 320
Query: 119 tttagaaatgtaaatgccatgggacaggattggttcagtagcctaaggaacaaagaagat 178
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 tttagaaatgtaaatgccatgggacaggattggttcaatagcctaaggaacaaagaagat 380
Query: 179 ag 180
||
Sbjct: 381 ag 382
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 582
Length adjustment: 8
Effective length of query: 172
Effective length of database: 574
Effective search space: 98728
Effective search space used: 98728
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
