BAC Information

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BAC

Clone NameMSMg01-476L03
Chromosome5 (Build37)
Map Location 33,624,269 - 33,797,937
singlet/doubletdoublet
Overlap geneMaea, 4933407H18Rik, LOC672284
Upstream genePlb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1
Downstream gene2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476L03.T7 (MSMg01no476_l03.b1)MSMg01-476L03.TJ (MSMg01no476_l03.g1)
ACCAG558225AG558226
length760747
length of high quality
(start - end)
576 (72 - 647)516 (75 - 590)
definitionCHROMAT_FILE: MSMg01no476_l03.b1 PHD_FILE: MSMg01no476_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:53 2005CHROMAT_FILE: MSMg01no476_l03.g1 PHD_FILE: MSMg01no476_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,797,395 - 33,797,937)(33,624,269 - 33,624,771)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGNAATTTCCCGTGACAATGCAGTTGTCATTAAGCAAATTCATGG
ATTTACAGATAAAATGGCCCCCAGGAACCAAACGTGAAAACAAAATCTTT
AGAAAGACAGAAAACAGGAAATACAAGAAGGTGAGCAGGTCACGGGTCAG
AAGGCAAGCAGCTGGGCCCTGGGCCTCCCACTGGGGACACACTGGGGACA
ATGTGAATAGAGCATGACCAGTGCAGGCCAGCATACAGCGTAGGCATCAT
TTGCCCTGAGAAACTACATCCCATATAGAGATGGGGAAAAGAAACAACAG
ACAAAGGGGACCAGCAATCACACTCCTGGCCAGAGCATGAGATAGAAATT
ACAGTCCTGAGCATGGGAGATGGCTCGGCAGTGAAGAGCACTGGATGCTC
TGCCAGAGGACCCAGGAGCAATCCCAGTGCCACGAGGCTCACAGCTGTCT
GCAACTCCAGTTTCAGGGGCTCTGATGCCATCTCCTGGCCTCTGGGCACT
ATGTACATATGCTACACAGAAGCAGATGGAGGCAAACAGTCAAACACATG
AGATACATGAATCTTTTTTAGGTTAAGAATGATTGCATGCATGTGCATCT
GTGAGGGGCTTCATGTACCCAAGTGCAGGCGCCCTCAGAAGCCATCAGAA
CCCCTGAAGCTGGAATACCCGGGGGTAAGGAGCTGCCCCAAACTAGGGTC
TTGGGATTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCAAGGCCCAGCCCCTCTGCCTGT
GGCTGCACTGAGGTTTCTGTCAGACAGATCATTTATTTCACTTCCTCTTC
TGTTTTCCCATTGGCATACCACTGCCCAACACATTCCAAGGAGGGATACT
AATGTCCCTGTTTTAAAATGGAGATAGCGATAGCTCCTGGGGAAGACAGG
ATGACAGCTCTGCCCACTGAAACTGGCCAGGTCTCCCAGAAGGCACAGCT
TTCCCAACATGTACACACGTTTAAACTGAAGATGACTCCCTCTAAAATGG
TTATTAACATGTCTTCTATTGAACTAAAGCAAGACAATGGGGGTGGGTAC
TGATTATCTGAGACACAGCTTTCTGCATCATTGGAAGTAATAACATAAAA
TAGCTTTACATCTGCCGCCAACTACGAACTACCTGCCACACACAAACCTA
CTGGATACGTGAGAACTTCTCTAGGGTTTTGGTTGGGGAAGACCACTTGT
CCTTTACTGGCAATGGGGTGGTAATGGTGAGCACTGCATCTCAGGCCATG
CTGGTCTGCCATACAAAGCTCAGTTGTGGACGCCCTCATTAGCGGCTTGG
CCAACATTTTTATGAGCTGACGCCACTGGGTTTGCCCTATATTCTCTTTG
ACAGATGCCCTGTTTATTTCCCCCCCCCCCCTTATGTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_l03.b1 MSMg01no476_l03.b1 CHROMAT_FILE:
MSMg01no476_l03.b1 PHD_FILE: MSMg01no476_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:53 2005
         (576 letters)



>mm_chr5_33797395_33798370
          Length = 976

 Score = 1019 bits (527), Expect = 0.0
 Identities = 539/543 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgcagttgtcattaagcaaattcatggatttacagataaaatggcccccaggaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aatgcagttgtcattaagcaaattcatggatttacagataaaatggcccccaggaaccaa 484

                                                                       
Query: 61  acgtgaaaacaaaatctttagaaagacagaaaacaggaaatacaagaaggtgagcaggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 483 acgtgaaaacaaaatctttagaaagacagaaaacaggaaatacaagaaggtgagcgggtc 424

                                                                       
Query: 121 acgggtcagaaggcaagcagctgggccctgggcctcccactggggacacactggggacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 acgggtcagaaggcaagcagctgggccctgggcctcccactggggacacactggggacaa 364

                                                                       
Query: 181 tgtgaatagagcatgaccagtgcaggccagcatacagcgtaggcatcatttgccctgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tgtgaatagagcatgaccagtgcaggccagcatacagcgtaggcatcatttgccctgaga 304

                                                                       
Query: 241 aactacatcccatatagagatggggaaaagaaacaacagacaaaggggaccagcaatcac 300
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aactacatcccaaagagagatggggaaaagaaacaacagacaaaggggaccagcaatcac 244

                                                                       
Query: 301 actcctggccagagcatgagatagaaattacagtcctgagcatgggagatggctcggcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 actcctggccagagcatgagatagaaattacagtcctgagcatgggagatggctcggcag 184

                                                                       
Query: 361 tgaagagcactggatgctctgccagaggacccaggagcaatcccagtgccacgaggctca 420
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tgaagagcactggttgctctgccagaggacccaggagcaatcccagtgccacgaggctca 124

                                                                       
Query: 421 cagctgtctgcaactccagtttcaggggctctgatgccatctcctggcctctgggcacta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 cagctgtctgcaactccagtttcaggggctctgatgccatctcctggcctctgggcacta 64

                                                                       
Query: 481 tgtacatatgctacacagaagcagatggaggcaaacagtcaaacacatgagatacatgaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  tgtacatatgctacacagaagcagatggaggcaaacagtcaaacacatgagatacatgaa 4

              
Query: 541 tct 543
           |||
Sbjct: 3   tct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no476_l03.g1 MSMg01no476_l03.g1 CHROMAT_FILE:
MSMg01no476_l03.g1 PHD_FILE: MSMg01no476_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:53 2005
         (516 letters)



>mm_chr5_33624069_33624984
          Length = 916

 Score =  903 bits (467), Expect = 0.0
 Identities = 494/503 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcaaggcccagcccctctgcctgtggctgcactgaggtttctgtcagacagatcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcaaggcccagcccctctgcctgtggctgcactgaggtttctgtcagacagatcattt 260

                                                                       
Query: 61  atttcacttcctcttctgttttcccattggcataccactgcccaacacattccaaggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttcacttcctcttctgttttcccattggcataccactgcccaacacattccaaggagg 320

                                                                       
Query: 121 gatactaatgtccctgttttaaaatggagatagcgatagctcctggggaagacaggatga 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 321 gatactaatgtccctgttttaaaatggagatggcgatagctcctggggaaggcaggatga 380

                                                                       
Query: 181 cagctctgcccactgaaactggccaggtctcccagaaggcacagctttcccaacatgtac 240
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 cagctccacccactgaaactggccaggtctcccagaaggcacagctttcccaatatgtac 440

                                                                       
Query: 241 acacgtttaaactgaagatgactccctctaaaatggttattaacatgtcttctattgaac 300
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacgcctaaactgaagatgactccctctaaaatggttattaacatgtcttctattgaac 500

                                                                       
Query: 301 taaagcaagacaatgggggtgggtactgattatctgagacacagctttctgcatcattgg 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagcaagacaatgggggcgggtactgattatctgagacacagctttctgcatcattgg 560

                                                                       
Query: 361 aagtaataacataaaatagctttacatctgccgccaactacgaactacctgccacacaca 420
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 aagtaataacataaaatagctttacatctgccgccaacgacgaactacctgccacacaca 620

                                                                       
Query: 421 aacctactggatacgtgagaacttctctagggttttggttggggaagaccacttgtcctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacctactggatacgtgagaacttctctagggttttggttggggaagaccacttgtcctt 680

                                  
Query: 481 tactggcaatggggtggtaatgg 503
           |||||||||||||||||||||||
Sbjct: 681 tactggcaatggggtggtaatgg 703


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space:   458436
Effective search space used:   458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)