Query= MSMg01no476_m24.b1 MSMg01no476_m24.b1 CHROMAT_FILE:
MSMg01no476_m24.b1 PHD_FILE: MSMg01no476_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:02 2005
(485 letters)
>mm_chr5_57880839_57881723
Length = 885
Score = 907 bits (469), Expect = 0.0
Identities = 481/485 (99%)
Strand = Plus / Plus
Query: 1 tggctctgtgttatctatttccattggctggtgtcattaatagtttcaaggattggttct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggctctgtgttatctatttccattggctggtgtcattaatagtttcaaggattggttct 260
Query: 61 tgcctatagggtaggtctctgttttgaccagtcattggttggccattccctacatctctg 120
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 tgcctatagggtaggtctctgttttgactagtcattggttggccattccctacatctctg 320
Query: 121 ctatgtctttgtccctgaacatattgtaggcagggcacattttgggtccaaggtgtaacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatgtctttgtccctgaacatattgtaggcagggcacattttgggtccaaggtgtaacg 380
Query: 181 gatgggctcctgtcctcaaggagtactgcatggctataggaactggtcactttaaggttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatgggctcctgtcctcaaggagtactgcatggctataggaactggtcactttaaggttc 440
Query: 241 atattccctactgttatgagtctcacctataacaggacccaatagaacttggagctcccc 300
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattccctactgctaggagtctcacctataacaggacccaatagaacttggagctcccc 500
Query: 301 cagggttgacttgttttgtttatatatttatatacttactctttgtatgcactcctatga 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggattgacttgttttgtttatatatttatatacttactctttgtatgcactcctatga 560
Query: 361 taagcttgtacataacttccccttctgacactggatcttccctatctattacatctaggg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagcttgtacataacttccccttctgacactggatcttccctatctattacatctaggg 620
Query: 421 aagcattactcatctttcagaattcacctggaatagacttttcaacattgcctttttact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcattactcatctttcagaattcacctggaatagacttttcaacattgcctttttact 680
Query: 481 gattt 485
|||||
Sbjct: 681 gattt 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_m24.g1 MSMg01no476_m24.g1 CHROMAT_FILE:
MSMg01no476_m24.g1 PHD_FILE: MSMg01no476_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:02 2005
(505 letters)
>mm_chr5_58031559_58032461
Length = 903
Score = 890 bits (460), Expect = 0.0
Identities = 493/510 (96%), Gaps = 12/510 (2%)
Strand = Plus / Minus
Query: 1 aataacaacaacaacaggagaacacaaaggatatagtgactcctagaattggtatgtatg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 676 aataacaacaacaacaggagaacacaaaggatatggtgactcctagaattggtatgtatg 617
Query: 61 tacttgagcagcatgtagcttttaagactgataaacaaaacagaacagaacaaaaaacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tacttgagcagcatgtagcttttaagactgataaacaaaacagaacagaacaaaaaacaa 557
Query: 121 aacaacaagaaaagcaagacaaaccttaaattttatagacttgaaacatgtgtgtgttta 180
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 556 aacaacaagaaaagcaagacaaaccttaaattttatagacttgaaac--gtgtgtgttta 499
Query: 181 ttgaacatgagttgacttcctgaaatgcacaccgtgtttgacactcccagctttgtgatt 240
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 498 ttgaacatgagttgtcttcctgaaacgcacaccgtgtttgacactcccagctttgtga-- 441
Query: 241 tttt-----gaagctatggctacaagaagaggcttctttttgccagtccacaaccacaga 295
| |||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 ---tgaaacgaagctttggctacaagaagaggcttctttttgcaagtccacaaccacaga 384
Query: 296 ttcagtctctgatcctgtatactatgattaattcagatatcttctgccttcaagtccctg 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttcagtctctgatcctgtatactatgattaattcagatatcttctgccttcaagtccctg 324
Query: 356 ccatgtttgagttcctattctgagttccttcagtgatgaacagtgatatgaaagtgtaag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccatgtttgagttcctattctgagttccttcagtgatgaacagtgatatgaaagtgtaag 264
Query: 416 ccaaataaactctttctgctccaactcgctttctagttgaggtgtttcaatgcagttctc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccaaataaactctttctgctccaactcgctttctagttgaggtgtttcaatgcagttctc 204
Query: 476 aataccctatctaagacattgttagagatt 505
||||||||||||||||||||||||||||||
Sbjct: 203 aataccctatctaagacattgttagagatt 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 903
Length adjustment: 10
Effective length of query: 495
Effective length of database: 893
Effective search space: 442035
Effective search space used: 442035
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
