Query= MSMg01no476_p19.b1 MSMg01no476_p19.b1 CHROMAT_FILE:
MSMg01no476_p19.b1 PHD_FILE: MSMg01no476_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:17 2005
(491 letters)
>mm_chr5_3903997_3904890
Length = 894
Score = 723 bits (374), Expect = 0.0
Identities = 463/494 (93%), Gaps = 9/494 (1%)
Strand = Plus / Plus
Query: 1 taaaacagtaaagttatccagtgagtttcaagttgttaacatcctgcaaactagcaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 taaaacagtaaagttatccagtgagtttcaagttgttaacatcctgcaaactaacaaaaa 260
Query: 61 gctagctcaatttccttccctttatgctgacctcacagtcctaacgatcttactccaggc 120
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 261 gctagctcaatttccttccctttatgctgacctcatagtcctaaagatcttactccaggc 320
Query: 121 aacttactttctttgaagagtgcctaaccagaatctacagagactccttgagtcagattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttactttctttgaagagtgcctaaccagaatctacagagactccttgagtcagattt 380
Query: 181 cctattataacaaaggcccatggcaaagaacaggatactggcttaggaaatttgctgctt 240
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 cctattataacaaaggcctatggcaaagaacaggatactggcttaggaaatttgctgcct 440
Query: 241 gcagtcctgatggtatcctggattcagtgggaatgaggctgacaacataacaggacagaa 300
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcagtcctgaagggatcctggattcagtgggaatgaggctgacaacataacaggacagaa 500
Query: 301 gtggccaagacaaatggaataattcctagaaatcttatacagccatgtgagtctaaatgc 360
||||||||||||||| ||||||||| |||||||| || |||| ||| ||||| |||| |
Sbjct: 501 gtggccaagacaaatagaataattcatagaaatcctagacagtcatatgagtttaaacac 560
Query: 361 ctgtgagatgtttttatcttacagaa--aca-cttttaatcaatta-c-catggtgtaat 415
||||| | |||||| |||||| |||| ||| |||| ||||||||| | || |||||||
Sbjct: 561 ctgtggggtgttttgatcttagagaactacatcttt-aatcaattatcaca--gtgtaat 617
Query: 416 at-caatcttggtagagaatttatctcatcagagagttggaaagcaaatactaagaagga 474
| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 618 tttcaatcttggtagagaatttatctcatcagagagttggaaaacaaatactaagaagga 677
Query: 475 tggcatcttccttg 488
||||||||||||||
Sbjct: 678 tggcatcttccttg 691
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 894
Length adjustment: 10
Effective length of query: 481
Effective length of database: 884
Effective search space: 425204
Effective search space used: 425204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_p19.g1 MSMg01no476_p19.g1 CHROMAT_FILE:
MSMg01no476_p19.g1 PHD_FILE: MSMg01no476_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:17 2005
(248 letters)
>mm_chr5_3971776_3972423
Length = 648
Score = 480 bits (248), Expect = e-140
Identities = 248/248 (100%)
Strand = Plus / Plus
Query: 1 tggtgtttacacttctcaaaatcaaagcccagaattacaagagtatagatacgaagttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggtgtttacacttctcaaaatcaaagcccagaattacaagagtatagatacgaagttca 260
Query: 61 aggtaaaaagcttactatactgttaaacaggatttactttgctcaagtcaattgcttata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtaaaaagcttactatactgttaaacaggatttactttgctcaagtcaattgcttata 320
Query: 121 aacgtaactttaagcaacttaatgatagatacgttttcttagtatcttatttttagccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacgtaactttaagcaacttaatgatagatacgttttcttagtatcttatttttagccat 380
Query: 181 gaaattcatatttctttctccttgatttcttcattccaatctattttttattctaattct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaattcatatttctttctccttgatttcttcattccaatctattttttattctaattct 440
Query: 241 ttttgtta 248
||||||||
Sbjct: 441 ttttgtta 448
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
