BAC Information

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BAC

Clone NameMSMg01-476P24
Chromosome5 (Build37)
Map Location 125,210,426 - 125,210,681
singlet/doubletsinglet
Overlap geneDnahc10
Upstream geneKntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9, 2810006K23Rik, Cdk2ap1, Sbno1, Setd8, BC003324, LOC606492, 6330548G22Rik, 2900002H16Rik, Rpl32-ps5c, Tmed2, Ddx55, Eif2b1, Gtf2h3, 4432405B04Rik, Atp6v0a2, Atp6v0a2
Downstream geneCcdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476P24.T7 (MSMg01no476_p24.b1)MSMg01-476P24.TJ (MSMg01no476_p24.g1)
ACCAG558457AG558458
length805802
length of high quality
(start - end)
248 (73 - 320)249 (75 - 323)
definitionCHROMAT_FILE: MSMg01no476_p24.b1 PHD_FILE: MSMg01no476_p24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:18 2005CHROMAT_FILE: MSMg01no476_p24.g1 PHD_FILE: MSMg01no476_p24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAAACTTGCCGTCGCTAAACGACTCACTATATTCATAACACCGCGGAA
TTCTTGCTTTCTCCCATAAAAACACGCTTGCCAATTGTATTTGTGAGTAG
TGGTCTCTGTGAGGCACTTTCGGACTTAACAGTCTGCATGTCTGTATATG
CACCATGCACACGCCTGGTGTTCGCAGAGGCCAAAGGAGGGCTTGAGATT
CCCCGGGCTGGATGATGGACAGTTGTGAGCATCCTGTGGATGTTGGGAAC
CATACCTAGATTCTCTGCAGGAACAGCCACTCTTCTTAACTTGTGAGCCA
TCTTTCCAGCCCCTAGCTCTTTTGNTGTTAAGACAGCTAGCCTACACTGG
TCTCAAACTTGTGTTAATTCTCCAGTCTCAGCCTCCTGAGTGCTGCCTGC
ACATGTGTACAGCAGCATGTCCAGTAACAAATACTATTCTTACTATATGC
CACGTCGCTATTATCACAGCCCTTGTCCCTCGCTGTTCCTTCTTTTCTTG
AACGCAACCTGCCCATTCTTTTTTTGCCTCCCTATCCTCATCGCCTTATA
CCTTTCTTTCCCCCTTTTTTATTTTTCCCCCCCCCCCCCTTTTTTCCTTT
TTCTCCTCTCCCCCCCCCTTTCTTCCCCCCTTTATTATACCTTTCCCATC
TACACCCCCCCCCTTCCTTTCCCTCTTTTCCCCCCCTTCCCTATTTCCCT
CCTCCTCTCCCCTTCCTTTTTTTTCTCCCTCTTTTTTCTTTACCCCCACC
TCTTTCCTTTTTTTCCTCCCTCCTTTTTTTCCTCCTTTTCCTCTCCTTTA
TATTN
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGTCAGGGTTCTATACCTAT
CTTGAACCCTGTCTCAAAACACCCCCAAATACCCACACAAAACAAACAAA
CAAACAGACTGTACCCATGAATGCCCCCCTACCCCCCCCCCCCACACACA
CACAAAGCTTGAAGGTACCTTTTGAACTTCTGAGGAAAAAAACCACATTC
TGTTGCAAAAATTCCTCGGGAAGAGAGGCGAGGTTCACACGCAGCTCCAG
CTTGTTGATGATGCGTTTTACAATTTTTTGAAACAGACAGGACCCCATTG
GGCCCGCAGGTGATCGCTCGGTGGAATGTGGGCGTGCCTAATATGATTAA
GGAGGCCGTGGCTATACAGTGGCCACAGAAGAGCTAATTCACACTCGGAT
CCCTGACCCTGAGCCTGCATCTTCTACTAACCAGGCTGGGCGGTGAAGAT
TGCGGTGTACTGATCATAGTTGACCGTCAATGCCCTGGGCTTTGTCCACT
TCTACCTCTTCCCCCTTATATTCTATCTCACCTTCCCTATTTCCACCCAC
TTCCCCCCTTCTCCCCTCACTTTCCCTCTTTTTTCCACTTTCTCCCTTTT
CTATCCCATTACAATATATTCCCCTCTTCTTTCCCTTTTTTCATTTTCCC
TTTACTTTCCCTTCTCCTTCTTCATCTTCTCTTTCCCCCCACCTATTTAC
CCTTTTTACCCTTCCTCTTTCCCACCCCCCTTTATTCTTCCTCCTCTTCT
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_p24.g1 MSMg01no476_p24.g1 CHROMAT_FILE:
MSMg01no476_p24.g1 PHD_FILE: MSMg01no476_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:18 2005
         (249 letters)



>mm_chr5_125210226_125210881
          Length = 656

 Score =  437 bits (226), Expect = e-127
 Identities = 246/256 (96%), Gaps = 7/256 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagtcagggttctatacctatcttgaaccctgtctcaaaacacccccaaataccc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 caggacagtcagggctctatacctatcttgaaccctgtctcaaaacacccccaaataccc 397

                                                                       
Query: 61  acacaaaacaaacaaacaa----acagactgtacccatgaatgcccccctaccccccccc 116
           |||||||||||||||||||    ||||||||||||||||||||||||||| |||||||||
Sbjct: 396 acacaaaacaaacaaacaaacagacagactgtacccatgaatgcccccctgccccccccc 337

                                                                       
Query: 117 cc---cacacacacacaaagcttgaaggtaccttttgaacttctgaggaaaaaaaccaca 173
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccacacacacacacacaaagcttgaaggtaccttttgaacttctgaggaaaaaaaccaca 277

                                                                       
Query: 174 ttctgttgcaaaaattcctcgggaagagaggcgaggttcacacgcagctccagcttgttg 233
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ttctgttgcaaaaactcctcgggaagagaggcgaggttcacacgcagctccagcttgttg 217

                           
Query: 234 atgatgcgttttacaa 249
           ||||||||||||||||
Sbjct: 216 atgatgcgttttacaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 656
Length adjustment: 9
Effective length of query: 240
Effective length of database: 647
Effective search space:   155280
Effective search space used:   155280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)