BAC Information

Click to search

BAC

Clone NameMSMg01-477A06
Chromosome5 (Build37)
Map Location 45,049,967 - 45,050,595
singlet/doubletsinglet
Overlap geneLdb2
Upstream gene5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1, LOC100041413, Tapt1, LOC100040717, LOC545747
Downstream geneLOC100041481, LOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477A06.T7 (MSMg01no477_a06.b1)MSMg01-477A06.TJ (MSMg01no477_a06.g1)
ACCAG558469AG558470
length738720
length of high quality
(start - end)
50 (45 - 94)637 (84 - 720)
definitionCHROMAT_FILE: MSMg01no477_a06.b1 PHD_FILE: MSMg01no477_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:19 2005CHROMAT_FILE: MSMg01no477_a06.g1 PHD_FILE: MSMg01no477_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAAGAGAATTATGGCGGCGCTGTCGACTCACTATATTACAGGACCGCG
GAATTCTCCACGTTTATTTCCAGTTTGTAATCCCACCGACAGTAGNNNAN
NNNNNNNNGNGGGAGGNNNAAAAAAAAAAGAGAAGGGGAAGGAGGGGGGA
GGGGGGTCGATAGGAGGAAGGAGGGTTTGTTTTTTTATTTAAGAAGGGNG
GNCCCCTACATGCCCTTTCTCCCACCATTGGTTTGGGCCAAGCAATTTTT
GTTTTTTTTTTAAGGGGGGAAATCCCAATGGGGGGAGTTTAACTTGGGAA
AAGGAGGGATTCCCCCTTTAATGGTAAAAATAGAAACCCAAAAAAAAAGG
CCTTTCCAGCAAGGGGCTGGCCCTTGTGAATAAAGAAAGAAGCTGGTTGG
GGGCAAAACCAAAAACACTTTTTCCCCCCCCGGGGGCACGGGGGGTAACC
CAGGGGTTATATTGGAAACAGGTGGGAAATCCTCGGGGATTTTTTTAAAA
CAGGGGTTATTTATTTTCCACGAGAAACCCCGGGGCCCCCCTTTTTGAAA
AAAAAAAAAAAAGGGGGGGGAAGAGGGGGTTTTTTCTGGAGAAAACCCGA
AAAAGGGGGGTTCCCCATAACCCTTTTTTAGAGAAAAAAAACCCCCCCCC
CCTGGGTGAAAAAAGGGTTGGTTTTGGTTCCCCCCCCGTAGGCCCTTTGG
GAAAAAAAAAAAGGCCGCCCCCCCTCCTTTATTGGTGG
CTTATTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTACACAAAGGAATCTGTCATCAACTGCTAG
CTTTAGTTAGACCTACACCTCAACTAACACAATGTTCAGCTTGGTTGTAT
CCAGAACACCCAGATTATCCAGCTAGCCTGGCCTGAGCTCCTAAGTCAAG
AAAACCGAAGCAATATCATGTGCTATTTTGAGTCTGGAGTATGTAACAAT
CTGATAGGCTGCTACTGAAAACTAAAACTAAATCAGATAGGTTGCCTCTC
ATGGTCTGCACATCACGGAGCATTAGTTATTAGCGATTCTAATACACTTG
ACTAAGAACTATTTCAAAAGTGGGTCAAAGAACAAAACACAATCACACAT
CAGCCACTTTTCTTCTAGATTATTTCCAATGAAAAAAAAGACCAGAGAAC
ACTTCATCCCAAGTCACTGACGACCAGAAACTTGTGTTTCAGAACAACAG
TAACAAGATGTATATATGGAGGTGTGAATTCCACTTCTAGAATTAACTAG
GCAAGTTGCTGTGAACAAGCCAAAGCCGAGTCAGCTTCTGGATGTGTTCT
GTACAAAATAATCATTACAGTTACGATTTTTTGATTATCTTTAAGTACCG
GGAAGTGCCTGCATGTCACTTATAAATATCATTATTCTGGTGCTACGCAA
ATATAGTATTCATTGAAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_a06.g1 MSMg01no477_a06.g1 CHROMAT_FILE:
MSMg01no477_a06.g1 PHD_FILE: MSMg01no477_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:19 2005
         (637 letters)



>mm_chr5_45049758_45050795
          Length = 1038

 Score = 1131 bits (585), Expect = 0.0
 Identities = 618/631 (97%), Gaps = 5/631 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  actgctagctttagttagacctacacctcaactaacacaatgttcagcttggttgtatcc 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 actgctagctttagttagacctacacctcaactaacacaatgttcagcttggttgtatcc 269

                                                                       
Query: 70  agaacacccagattatccagctagcctggcctgagctcctaagtcaagaaaaccgaagca 129
           |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 270 agaacacccagattatccagctagcctgtcctgagctcctaagtcaggaaaaccgaagca 329

                                                                       
Query: 130 atatcatgtgctattttgagtctggagtatgtaacaatctgataggctgctactgaaaac 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atatcatgtgctattttgagtctggagtatgtaacaatctgataggctgctactgaaaac 389

                                                                       
Query: 190 taaaactaaatcagataggttgcctctcatggtctgcacatcacggagc---attagtta 246
           ||||||||||||||||||||||||||||||||| |||||||||||||||   |  || ||
Sbjct: 390 taaaactaaatcagataggttgcctctcatggtttgcacatcacggagcacaa--agcta 447

                                                                       
Query: 247 ttagcgattctaatacacttgactaagaactatttcaaaagtgggtcaaagaacaaaaca 306
           |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttagtgattctaatgcacttgactaagaactatttcaaaagtgggtcaaagaacaaaaca 507

                                                                       
Query: 307 caatcacacatcagccacttttcttctagattatttccaatgaaaaaaaagaccagagaa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 caatcacacatcagccacttttcttctagattatttccaatgaaaaaaaagaccagagaa 567

                                                                       
Query: 367 cacttcatcccaagtcactgacgaccagaaacttgtgtttcagaacaacagtaacaagat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cacttcatcccaagtcactgacgaccagaaacttgtgtttcagaacaacagtaacaagat 627

                                                                       
Query: 427 gtatatatggaggtgtgaattccacttctagaattaactaggcaagttgctgtgaacaag 486
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 628 gtatatatggaggtgtgaattccacttctagaattaactaggtaagttgctgtgaacaag 687

                                                                       
Query: 487 ccaaagccgagtcagcttctggatgtgttctgtacaaaataatcattacagttacgattt 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ccaaagccgagtcagcttctggatgtgttctgtacaaaataatcattacagttacgattt 747

                                                                       
Query: 547 tttgattatctttaagtaccgggaagtgcctgcatgtcacttataaatatcattattctg 606
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gttgattatctttaagtaccgggaagtgcctgcatgtcacttataaatatcattattctg 807

                                          
Query: 607 gtgctacgcaaatatagtattcattgaaaat 637
           |||||||||||||||||||||||||||||||
Sbjct: 808 gtgctacgcaaatatagtattcattgaaaat 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1038
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1028
Effective search space:   644556
Effective search space used:   644556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)