Query= MSMg01no477_d12.b1 MSMg01no477_d12.b1 CHROMAT_FILE:
MSMg01no477_d12.b1 PHD_FILE: MSMg01no477_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:36 2005
(672 letters)
>mm_chr5_20920880_20921951
Length = 1072
Score = 1257 bits (650), Expect = 0.0
Identities = 665/670 (99%), Gaps = 1/670 (0%)
Strand = Plus / Plus
Query: 3 gaattctttaaggtgtgatctgaggctattactaaaggagttttggaaactgtacagttg 62
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 203 gaattctttaaggtgtgatatgaggctattactaaaggagctttggaaactgtacagttg 262
Query: 63 agaccagttggggatgcagaactcccaaaggagagtaggtaccatgccctcccaagactc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agaccagttggggatgcagaactcccaaaggagagtaggtaccatgccctcccaagactc 322
Query: 123 agtcagatgttcgtctctggagagaccagtgtggtcagaaacctaagaagatctcagaaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agtcagatgttcgtctctggagagaccagtgtggtcagaaacctaagaagatctcagaaa 382
Query: 183 atggagagatctcccatgctcatgaattggcagaattaacatagtaaagatggccatcct 242
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 383 atggagagatctcccatgctcatggattggcagaattaacatagtaaagatggccatcct 442
Query: 243 accaaaggcaatctacagattcaatgcaatccacatcaaaatcccaacacacttcttcaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 accaaaggcaatctacagattcaatgcaatccacatcaaaatcccaacacacttcttcaa 502
Query: 303 agacatggaaagaaaaattctcaaattcatctggaaaggcaaaaaaccccagatagcgaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agacatggaaagaaaaattctcaaattcatctggaaaggcaaaaaaccccagatagcgaa 562
Query: 363 aacaattcttaacaataaaaggacttctgggggaataaccattcctgacctaaagctgta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aacaattcttaacaataaaaggacttctgggggaataaccattcctgacctaaagctgta 622
Query: 423 ctacagagcaatagtgattaaaaactgtatggtagtagtacagacacagacatgttgatc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctacagagcaatagtgattaaaaactgtatggtagtagtacagacacagacatgttgatc 682
Query: 483 aatggaatagaattgaagaccagaaataaaaccacacactaacgcacacttgatctttga 542
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aatg-aatagaattgaagaccagaaataaaaccacacactaacgcacacttgatctttga 741
Query: 543 caaagaagctaaaaatatacaatggaaaaaaagaaagcatcttcgataaatagtactggt 602
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 742 caaagaagctaaaaatatacaatggaaaaaaagaaagcatctttgataaatagtactggt 801
Query: 603 ctaattggctgtctgtatgtagaagaatgaaaatagacccatatttgtcaccttgcacaa 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ctaattggctgtctgtatgtagaagaatgaaaatagacccatatttgtcaccttgcacaa 861
Query: 663 agctcaagtc 672
||||||||||
Sbjct: 862 agctcaagtc 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_d12.g1 MSMg01no477_d12.g1 CHROMAT_FILE:
MSMg01no477_d12.g1 PHD_FILE: MSMg01no477_d12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:36 2005
(674 letters)
>mm_chr5_21097170_21098243
Length = 1074
Score = 1158 bits (599), Expect = 0.0
Identities = 656/676 (97%), Gaps = 4/676 (0%)
Strand = Plus / Minus
Query: 1 gaggtgtgatattgtaaaatagtcacctaagaggtaaatgttacccgagctaatgagtga 60
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 765 gaggtgtgacattgtaaaatagtcacctaagaggtaaatgttacatgagctaatgagtga 706
Query: 61 gtaatgcactggacactgggacaagtgtcaatgcacacgcactgggaaaggcgttataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 gtaatgcactggacactgggacaagtgtcaatgcacacgcactgggaaaggcgttataca 646
Query: 121 gttttcgttactaggtaagcaaccatgcaaagcacagcagttatgtgaaaatccttaccc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 645 gttttcgttactaggtaagcaaccatgcaaagcacagcagttatgtgaaaatccaaatcc 586
Query: 181 attcatgcaaaaatttcacatccaaatgatgcataggatccagttagatttgtgttttgc 240
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 attcatgcacgaatttcacatccaaatgatgcataggatccagttagatttgtgttttgc 526
Query: 241 tg-natttttgctataattaatatcctattagaacttatagttggggatgatttaatcct 299
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgttattgttgctataattaatatcctattagaacttatagttggggatgatttaatcct 466
Query: 300 aaaatgtgggtaaaataaacttttcaagtttactaataaaaatcagatagtaatgagact 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 465 aaaatgtgggtaaaataaacttttcaagtttgctaataaaaatcagatagtaatgagact 406
Query: 360 tgag-aggaatcccagtgggtaaagagcttggtgtgcatgtgtgaagactggaatttaga 418
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agagaaggaatcccagtgggtaaagagcttggtgtgcatgtgtgaagactggaatttaga 346
Query: 419 tcctcagcaccaacccagcaagctaagtgtgtagtgtgcatttgcaaccccagtgctggg 478
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 345 tcctcagcaccaacccagcaagct--gtgtgtagtgtgcatttgcaaccccagtgctggg 288
Query: 479 ggcaaagatgggcagaccctggggacaagttggctgggcagtctagacaaaaaggagtct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggcaaagatgggcagaccctggggacaagttggctgggcagtctagacaaaaaggagtct 228
Query: 539 ttgaagttcattgaaagactctgtcgtaagcaagcaagctagtaagtaagcaagcaagca 598
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 227 ttgaagttcattgaaaaactctgtcgtaagcaagcaagcaagtaagtaagcaagcaagca 168
Query: 599 agtaagtaaataaatgtggggaagcagtcaaggaagacatcctaatatcaatctattgcc 658
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 aataagtaaataaatgtggggaagcagtcaaggaagacatcctaatatcaatctattgcc 108
Query: 659 tctaaatgcgcctacc 674
|||||||| |||||||
Sbjct: 107 tctaaatgtgcctacc 92
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
