BAC Information

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BAC

Clone NameMSMg01-477F12
Chromosome5 (Build37)
Map Location 42,869,752 - 43,090,398
singlet/doubletdoublet
Overlap geneEG636612
Upstream geneRab28, Bapx1, A230054D04Rik, LOC384308, LOC100040588
Downstream geneLOC433883, EG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477F12.T7 (MSMg01no477_f12.b1)MSMg01-477F12.TJ (MSMg01no477_f12.g1)
ACCAG558717AG558718
length732751
length of high quality
(start - end)		696 (37 - 732)407 (324 - 730)
definitionCHROMAT_FILE: MSMg01no477_f12.b1 PHD_FILE: MSMg01no477_f12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:45 2005CHROMAT_FILE: MSMg01no477_f12.g1 PHD_FILE: MSMg01no477_f12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,869,752 - 42,870,440)(43,089,994 - 43,090,398)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGATCCGCGGAATTCCT
TAAGCTTTTGACTGTTACAACCAATGAGCTGATTCTAGATTCAATATGAC
CCTCACATTAAAATGTGGTTATCTGGAGTCTCAGAGGTCAAGAAAGATCA
GTTGTTTCCAGATGTGAATTTATATATAAGCAGAGTAATCTCTGAGTTAA
AATTCTACAATGAGAAAGAACATCATGTATTCTGGTTCTCAAAAACTGAA
CCAGAATTTTTCCAATCTGTCATCTTCACTAAAGATATTAATTAAAACAA
AACATTGGGGACAATTTTCAGAGTCCTATAATCAGTATATATGGCAGAAT
CAGTTCTTTGCTCCAGAAACACAGTACCTCCTTCATATCACTAAAGGCAT
TGCAGACCATGGGTTGTTTATTTGTTCTGGCCCCTGTATTTATATATAGC
CCATGCTCTTACTTTACCTCCCAACAAATGTTCTGTGGGGCAATGGCTTG
TTCCACCAGACAGAAAACCTGGTAAGGTCTAGCAGATTCAGGAACCCTGG
CAATTCTCATAATTAAGAACAGTTGGCATTTAAATCTACTCCTGACCTGA
AACACTTGGCCACAACAGCCCCTTGAGAGGACTGTGGCAATCAGTCATAT
AGGGACAACACCTGAAGTCCTTCCACATGCAGATGAGGCATTCCTAACAT
CTTAGACTAAGCCAATAGAAAGCATCTGCATN

CCACGATATAGTGGGTAGGCTGGNGGNCGCCGGTTCATACTAGGGAGGTG
AACNANAGAATGCCACAAAAAGAGCTTTGNTTAGCTGTGTACCCCATTTT
TAATAGGGTTATTTCTTTCCTTGGAGTCTAACTTCTTGAATTCTTTGTGT
ATTTTGGATATTAGCCTTCTATCAGATGTAGGAATAGTAAAGATCTTTCC
CCAGTCTGTTGCTTGCCTTTTTGTCCTACTGACAATCAAAAAGATGTAAT
TTATTCCTGGTATTGGGGGTTTCATTTGTTAGCATATGATTTCAATTTGA
GATGTTCTCTTCCTTATTTANATATTCACTTACATTCCTTTCATACGTGT
CCATACTTTAGAAAGCTTCTTCTGTAGTAGGTTTCTCTGTAGCTTTCCAA
ATGGCCATTACCGCTAACTGTCCCTCTTATATTCTACTCTTTTACCCTCA
CACTCTATCTCATCCCATTTAATGTGCAATTATAATTTTTCTTTTATCTT
ATTTTAATACTATATTCTGTTTTACCTTCCTTCTCCATGATCCCTTACTA
GCTACCTAATCTCTGTAGATATTCTGAGTGAACCACACATTTCTAAAGTT
TAAAAACTAACAAATACATATATAGAAAATATGCAACTTTTTAAATTGTA
TCTGACTGCTTACTTGGAATAATTGTTTTAGCTCCATCAATTAATCTGAA
AATTTTATTTTAACAGCTAATTAATATTCCATTGTGTAAATGTACATTTT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_f12.b1 MSMg01no477_f12.b1 CHROMAT_FILE:
MSMg01no477_f12.b1 PHD_FILE: MSMg01no477_f12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:45 2005
         (696 letters)



>mm_chr5_42869546_42870641
          Length = 1096

 Score = 1324 bits (685), Expect = 0.0
 Identities = 688/689 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattccttaagcttttgactgttacaaccaatgagctgattctagattcaatatgaccc 66
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccttaagcctttgactgttacaaccaatgagctgattctagattcaatatgaccc 266

                                                                       
Query: 67  tcacattaaaatgtggttatctggagtctcagaggtcaagaaagatcagttgtttccaga 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcacattaaaatgtggttatctggagtctcagaggtcaagaaagatcagttgtttccaga 326

                                                                       
Query: 127 tgtgaatttatatataagcagagtaatctctgagttaaaattctacaatgagaaagaaca 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgtgaatttatatataagcagagtaatctctgagttaaaattctacaatgagaaagaaca 386

                                                                       
Query: 187 tcatgtattctggttctcaaaaactgaaccagaatttttccaatctgtcatcttcactaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tcatgtattctggttctcaaaaactgaaccagaatttttccaatctgtcatcttcactaa 446

                                                                       
Query: 247 agatattaattaaaacaaaacattggggacaattttcagagtcctataatcagtatatat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 agatattaattaaaacaaaacattggggacaattttcagagtcctataatcagtatatat 506

                                                                       
Query: 307 ggcagaatcagttctttgctccagaaacacagtacctccttcatatcactaaaggcattg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggcagaatcagttctttgctccagaaacacagtacctccttcatatcactaaaggcattg 566

                                                                       
Query: 367 cagaccatgggttgtttatttgttctggcccctgtatttatatatagcccatgctcttac 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cagaccatgggttgtttatttgttctggcccctgtatttatatatagcccatgctcttac 626

                                                                       
Query: 427 tttacctcccaacaaatgttctgtggggcaatggcttgttccaccagacagaaaacctgg 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tttacctcccaacaaatgttctgtggggcaatggcttgttccaccagacagaaaacctgg 686

                                                                       
Query: 487 taaggtctagcagattcaggaaccctggcaattctcataattaagaacagttggcattta 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 taaggtctagcagattcaggaaccctggcaattctcataattaagaacagttggcattta 746

                                                                       
Query: 547 aatctactcctgacctgaaacacttggccacaacagccccttgagaggactgtggcaatc 606
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aatctactcctgacctgaaacacttggccacaacagccccttgagaggactgtggcaatc 806

                                                                       
Query: 607 agtcatatagggacaacacctgaagtccttccacatgcagatgaggcattcctaacatct 666
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 agtcatatagggacaacacctgaagtccttccacatgcagatgaggcattcctaacatct 866

                                        
Query: 667 tagactaagccaatagaaagcatctgcat 695
           |||||||||||||||||||||||||||||
Sbjct: 867 tagactaagccaatagaaagcatctgcat 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1096
Length adjustment: 10
Effective length of query: 686
Effective length of database: 1086
Effective search space:   744996
Effective search space used:   744996
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no477_f12.g1 MSMg01no477_f12.g1 CHROMAT_FILE:
MSMg01no477_f12.g1 PHD_FILE: MSMg01no477_f12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:45 2005
         (407 letters)



>mm_chr5_43089651_43090457
          Length = 807

 Score =  714 bits (369), Expect = 0.0
 Identities = 396/405 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   tcacttacattcctttcatacgtgtccatactttagaaagcttcttctgtagtaggtttc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tcacttacattcctttcatacgtgtccatactttagaaagcttcttctgtagtaggtttc 689

                                                                       
Query: 63  tctgtagctttccaaatggccattaccgctaactgtccctcttatattctactcttttac 122
           ||||||||||| |||||||||||||  | ||||||||| |||||||||||||||||||||
Sbjct: 688 tctgtagcttttcaaatggccattattgttaactgtccttcttatattctactcttttac 629

                                                                       
Query: 123 cctcacactctatctcatcccatttaatgtgcaattataatttttcttttatcttatttt 182
           |||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||
Sbjct: 628 cctcacactctatctcatcccatttaatgtccttttataatttttcttttatcttatttt 569

                                                                       
Query: 183 aatactatattctgttttaccttccttctccatgatcccttactagctacctaatctctg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aatactatattctgttttaccttccttctccatgatcccttactagctacctaatctctg 509

                                                                       
Query: 243 tagatattctgagtgaaccacacatttctaaagtttaaaaactaacaaatacatatatag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tagatattctgagtgaaccacacatttctaaagtttaaaaactaacaaatacatatatag 449

                                                                       
Query: 303 aaaatatgcaactttttaaattgtatctgactgcttacttggaataattgttttagctcc 362
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaaatatgcaacttttaaaattgtatctgactgcttacttggaataattgttttagctcc 389

                                                        
Query: 363 atcaattaatctgaaaattttattttaacagctaattaatattcc 407
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atcaattaatctgaaaattttattttaacagctaattaatattcc 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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