Query= MSMg01no477_i14.b1 MSMg01no477_i14.b1 CHROMAT_FILE:
MSMg01no477_i14.b1 PHD_FILE: MSMg01no477_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:00 2005
(665 letters)
>mm_chr5_93120378_93121442
Length = 1065
Score = 1185 bits (613), Expect = 0.0
Identities = 640/659 (97%), Gaps = 16/659 (2%)
Strand = Plus / Plus
Query: 6 gaattcctgcctgaggaaaaaaaaagcaaccaggttaacttttatacacacacacacaca 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 gaattcctgcctgaggaaaaaaaaagcaaccaggttaacttttatacacacacacaca-- 279
Query: 66 cacacacacacacatatgtacgtatatatacacatatatataatatataatgagtaacta 125
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 --------------tatgtacgtatatatacacatatatataatatataatgagtaacta 325
Query: 126 tatatttgtatattttaaatgagtaatataatacatactatataggtatatgattaaaag 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tatatttgtatattttaaatgagtaatataatacatactatataggtatatgattaaaag 385
Query: 186 ttatatattataacacattcatatgtataatatgttatatatatttattatatataatac 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttatatattataacacattcatatgtataatatgttatatatatttattatatataatac 445
Query: 246 attaggcatatatatcttttactcagatatgtatttacacatataagtgttctgcaaatg 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 attaggcatatatatcttttactcagatatgtatttacacatataagtgttctgcaaatg 505
Query: 306 tctccgattgaattaaattagtgaaaatggggacacacgtgcttttatttaatttttagc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tctccgattgaattaaattagtgaaaatggggacacacgtgcttttatttaatttttagc 565
Query: 366 gggtctcccaagctttggttacagtgtgacatgttgtgagaagcaagctaaggttgtcat 425
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 566 gggtctcccaagctttggttacagcgtgacatgttgtgagaagcaagctaaggttgtcat 625
Query: 426 ccatctcctgttgttggatggagaaaggttttattcaacaaacaccatgctgatcttaga 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccatctcctgttgttggatggagaaaggttttattcaacaaacaccatgctgatcttaga 685
Query: 486 tgccaagtggatctgagcatcagtggggactctgctttcttttaaagctaatacatcccc 545
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 686 tgccaagtggatctgagcatcagtggggactctgctttcttttaaagctaatacatcctc 745
Query: 546 caaagcgttccctcctacatagagaacacaatttaattgaagaaatattcgtctcatttt 605
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 746 caaagcgttccctcctacatagagaacacaatttaattgaagaaataatcgtctcatttt 805
Query: 606 agtgagcctacagtgcaattggagacacataatgaaagattttctgtcaatctttgaaa 664
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 agtgagcctacagtgcaattggagacacataatgaaagattttctgtcaatctttgaaa 864
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_i14.g1 MSMg01no477_i14.g1 CHROMAT_FILE:
MSMg01no477_i14.g1 PHD_FILE: MSMg01no477_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:00 2005
(402 letters)
>mm_chr5_93302668_93303469
Length = 802
Score = 762 bits (394), Expect = 0.0
Identities = 400/402 (99%)
Strand = Plus / Minus
Query: 1 tgcctccccagtgcagggattaaaggcgtgtgccaccgccatctggcttcatggtagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tgcctccccagtgcagggattaaaggcgtgtgccaccgccatctggcttcatggtagttt 591
Query: 61 ctaagccaaaacaaccaccacaatgacatgtgaggttttaaatggggactctagtttccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctaagccaaaacaaccaccacaatgacatgtgaggttttaaatggggactctagtttccc 531
Query: 121 caaaggagcccaaatagttacatggcaggaaggaaagaattcctagtcctgacccttggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 caaaggagcccaaatagttacatggcaggaaggaaagaattcctagtcctgacccttggc 471
Query: 181 caggtgtcttggatcacctattagacactgtcctcagctccacacaaacacagggagtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 caggtgtcttggatcacctattagacactgtcctcagctccacacaaacacagggagtgg 411
Query: 241 tgcatggaaccctctccagtaagtccatatagtcctgtatgcagtcatcagggagagggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgcatggaaccctctccagtaagtccatatagtcctgtatgcagtcatcagggagagggg 351
Query: 301 atgtggctgcagagtgggtcatgaaaaagaaggcacgctgggaaaagtctcctgttaggt 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atgtggctgcagggtgggtcatgaaaaagaaggcacgctgggaaaagtctcctgttaggt 291
Query: 361 ggctggcccaggaagaaggaaatgtgaatgagactcttccat 402
||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ggccggcccaggaagaaggaaatgtgaatgagactcttccat 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space: 311649
Effective search space used: 311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
