BAC Information

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BAC

Clone NameMSMg01-477K08
Chromosome5 (Build37)
Map Location 9,680,610 - 9,680,976
singlet/doubletsinglet
Overlap geneGrm3
Upstream geneAbcb1a, EG330031, Abcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477K08.T7 (MSMg01no477_k08.b1)MSMg01-477K08.TJ (MSMg01no477_k08.g1)
ACCAG558948AG558949
length1,422740
length of high quality
(start - end)
---367 (331 - 697)
definitionCHROMAT_FILE: MSMg01no477_k08.b1 PHD_FILE: MSMg01no477_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:08 2005CHROMAT_FILE: MSMg01no477_k08.g1 PHD_FILE: MSMg01no477_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATAGATACCTTGCGCTGTTTGCGATGATCCGCGACGCGCCGTCGCGCG
TCCGAGCATTACTAGCTTCATGCGCTGCGTCCGCGAGCACTCCTGATCCT
ATTTTCTGCGCGCACCGTCGCCGTGCCTTGCGCCGGCCCCGCGCTCCACC
TGTATTCGCACAACGAACACGGCGACGCCAGGCACCCGCAGCTCNACGGC
GANCACCCTCCTCCTTGTACCGCGCAACGTGATTGCGAGTCCCGAACCAT
CCCCACGCCCCGCAAAGCGCGAACGCAGCAGAGACATGATTTATAGCCTT
TGTCGTGATGTCACTCTTGGCCTCTGCTCCACNTATTTCTCTTCTACGCA
ACGATGTCTATACACTTCTTTCCCCGCCGTGCTTACTACTCGTCTGCATC
GCATGCGGCGACGCTNCCCGCGTATGGACCGTGTCGTTCCCTCTTCTATC
GTCTCTATCATAATCCGCTTTACGATAACNCACCGCCGCGGCCGCNCTCC
CTGTATATTCTTGTACAAAGAGCCCGCGCGTTCGCCCGCTGAGTGACTAC
ATATATGAGTGGCGCGGCCTGCCGGCGTCCGTGTCACGCGTCCTCGACTG
ATCGCGCATTTTTGCTCATATCCGCGCACTTTATCCTCTGTCACTCTTTA
CTATTATAAGAGTGTGCGATCGCGACAGCTATCGACCATCCGCATCGCAA
AGCGACTGACAGTAACGCCATCANATTACTCCGATCCCATTCCCACCACA
CCACCGTGATACACTACTTCGTAATTACACGCATGCGTGTTTATCCATGC
CTACCCGATTCGAGACACAAGTGTATAGTCGCTGCCGCATTCGCAGAGTC
CTTGCATGATGTGGGTACCTCCATGCTCGACAGTATACCTAATAGTTTTT
AATACTCTCAGTATCGAGCACTGTGCGGCCGCCATGACGCGCTTTGATAA
CGATAGCACTGCGCNTTTGATCTCTCGTGACTGTGCGCGCTGAGTAGATG
TTGCGACGCGCGAATGTCTGCACACGTAATATCACCCCCGTGGCTAGTAC
ACACGGCCGTGTTATATATTATACGCGCACACCTATATCACACTATGATA
TCGGGCGGCCGGCAATTCACCGCGGCGTCTGTTTATAGTCGACGCGCCGT
GGCACAGANGAGACGACATGATGCGCGTGCGTGAAGAAGAATAATTATAC
CACGAGTTTTGTACGCTGCTTACGCCGAATATGGANGGAGAGAAGAAGTA
TCGTAATTCGCTACCATGGGTCACTACCCATACNGCAGCACATGCACGCG
TTCACTATCTAGATGACCGCGCTCGTTCTGTATCTCTTCCTCGCGCACCT
ATTCTCTCCGGCGCGCTATCGCTATGACGCGACNCGTTCTGTAACCTCTG
TGTCGTGTCTATTCGCTTATAN
NTTTCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCCCAGAAAAATTCTCTAACAGTATTTAGCTTTCC
TCAAAACCTCCTTCTTTCTAAGGTCATTTATTGACTACCTATAGGGTAAG
CTATAAAATCCTTTCTGTATTATTATTAACTGTAGTTATGAGGGACTTGG
GGGATTTCCAGTGTGATTGCATATTAGCCTCAAACAATGCTCTTTTTTAA
CATCATGCCTCAAATTCTGATAGCGAACCCTTCTGAGTTCATTTTGAAAA
CAGACCTGTTTCATGTAGATCTTATGATTCAGTCACATTTTTGTAAGATG
TCACTTGTCTGGCACTGTTGATATTGGTGACGAGCATCTTGTGTGTTTCT
TATTCCAATCAACTGCTTTCACTAAGTTCTACCTCACCCTAGTCAATATA
TCTGCATTATGTTCTAAGAAGTACTGCTTCATTTTCCTGCTGCATTTTAG
AGTTTTACAATCTTCCTATGTGTGAGCCTATTTTCTGCTCTTTTTGTATG
GCAGGAGGTAGCGGGGAGCAGAGATGATCAGTATGAAGTTAAAGAGTTTC
AAACCACTTCATGCCACAAGGAAGGCTCTGACACTTAATAGTTGCATTCA
GGAATCTCGCTAGTCTCCTTACATGAAAATAAATGTTTGCATTACTCATC
TATAAGGGTTTTGATAGCGATTACAGTATATCTACTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_k08.g1 MSMg01no477_k08.g1 CHROMAT_FILE:
MSMg01no477_k08.g1 PHD_FILE: MSMg01no477_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:08 2005
         (367 letters)



>mm_chr5_9680410_9681176
          Length = 767

 Score =  648 bits (335), Expect = 0.0
 Identities = 359/367 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtcacatttttgtaagatgtcacttgtctggcactgttgatattggtgacgagcatctt 60
           |||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||
Sbjct: 201 agtcacatttttgtaagatgtcccttggctggcactgttgacattggtgacgagcatctt 260

                                                                       
Query: 61  gtgtgtttcttattccaatcaactgctttcactaagttctacctcaccctagtcaatata 120
           |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 261 gtgtgtttcttattccaatcaactgctttcaccaagttttacctcaccctagtcaatata 320

                                                                       
Query: 121 tctgcattatgttctaagaagtactgcttcattttcctgctgcattttagagttttacaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tctgcattatgttctaagaagtactgcttcattttcctgctgcattttagagttttacca 380

                                                                       
Query: 181 tcttcctatgtgtgagcctattttctgctctttttgtatggcaggaggtagcggggagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 tcttcctatgtgtgagcctattttctgctctttttgtatggcaggaggtaggggggagca 440

                                                                       
Query: 241 gagatgatcagtatgaagttaaagagtttcaaaccacttcatgccacaaggaaggctctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagatgatcagtatgaagttaaagagtttcaaaccacttcatgccacaaggaaggctctg 500

                                                                       
Query: 301 acacttaatagttgcattcaggaatctcgctagtctccttacatgaaaataaatgtttgc 360
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 acacttaatagttgcattcaggaatcttgctagtctccttacatgaaaataaatgtttgc 560

                  
Query: 361 attactc 367
           |||||||
Sbjct: 561 attactc 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)