Query= MSMg01no477_l04.b1 MSMg01no477_l04.b1 CHROMAT_FILE:
MSMg01no477_l04.b1 PHD_FILE: MSMg01no477_l04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:12 2005
(470 letters)
>mm_chr5_34873415_34874282
Length = 868
Score = 862 bits (446), Expect = 0.0
Identities = 464/470 (98%), Gaps = 2/470 (0%)
Strand = Plus / Minus
Query: 1 cagcccgaggcacagctcaaagaccagagacaagtgggtgcaggtcagagatagtggcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cagcccgaggcacagctcaaagaccagagacaagtgggtgcaggtcagagatagtggcaa 609
Query: 61 ttccagcttcaggctgaggtctaactcttagtgccattagcgctggtcagtgggcaactc 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 608 ctccagcttcaggctgaggtct-actcttagtgccattagcgctggtcagtgggcaacgc 550
Query: 121 tagagagcctgactccagctacagaggtcctcaggccctgcatagatccagtttccactg 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 549 tagagagcctgactccagctacagaggtcctcaggccct-catagatccagtttccactg 491
Query: 181 agttgcactctatatcccagtgctagcagtggctgggtttcccctcaccatcacatacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agttgcactctatatcccagtgctagcagtggctgggtttcccctcaccatcacatacct 431
Query: 241 tctaagtgtatgtgatgaggctagaccttccatgtctgcccttttacagagagggtataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tctaagtgtatgtgatgaggctagaccttccatgtctgcccttttacagagagggtataa 371
Query: 301 agtgtccagctcacacaacaggtctataggaagcatctgcaccaacccaggcacaggagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 agtgtccagctcacacaacaggtctataggaagcatctgcaccaacccaggcacaggagg 311
Query: 361 ccatttgtgtgtccctagaggcttctgacaacagaacataatagcatcaggggacttgct 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 310 ccatttgtgtgtccctagaggcttctgacaacagaacataatggcatcaggggacttgct 251
Query: 421 cccttccttgctctaccgtgttcagacccatgcagctggccactgatctg 470
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 250 cccttccttgctctaccgtggtcagacccatgcagctggccactgatctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 868
Length adjustment: 10
Effective length of query: 460
Effective length of database: 858
Effective search space: 394680
Effective search space used: 394680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_l04.g1 MSMg01no477_l04.g1 CHROMAT_FILE:
MSMg01no477_l04.g1 PHD_FILE: MSMg01no477_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:12 2005
(242 letters)
>mm_chr5_34650439_34651080
Length = 642
Score = 437 bits (226), Expect = e-127
Identities = 238/242 (98%)
Strand = Plus / Plus
Query: 1 tcaacctgactgtcccaaggccccgcgccattacaatgcctgatcctgtccccactatgg 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 tcaacctgactgtcccaaggccccgcgccattacaatgcctgagcctgtccccactatgg 260
Query: 61 acaagccgagacctgtaagttgggcatttcttcctgcaccaccgggatgttaactaggag 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaagccgagacctgtgagttgggcatttcttcctgcaccaccgggatgttaactaggag 320
Query: 121 aacaggctgtgaaagtcattgggtggctgggcttctccagggtcaatgatgtactggacc 180
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 321 aacaggctgtgaaagtcattgggtagctgggcttctccagggtcaatggtgtactggacc 380
Query: 181 agagaggaacattcagtaacccacaatccacccgaatcctgcacacacacagagggaagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagaggaacattcagtaacccacaatccacccgaatcctgcacacacacagagggaagt 440
Query: 241 tg 242
||
Sbjct: 441 tg 442
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
