Query= MSMg01no477_m07.b1 MSMg01no477_m07.b1 CHROMAT_FILE:
MSMg01no477_m07.b1 PHD_FILE: MSMg01no477_m07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:18 2005
(341 letters)
>mm_chr6_3133804_3134545
Length = 742
Score = 429 bits (222), Expect = e-125
Identities = 305/342 (89%), Gaps = 17/342 (4%)
Strand = Plus / Plus
Query: 1 gtaggggacgcgctgtgctctaggtagatgaaagtgagactcaaagatttgttgggccac 60
||||||| ||| |||||| |||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 201 gtagggggcgctctgtgccctagttaggtgaaagtgagactcaaagatttgttgggccac 260
Query: 61 agtttttactttgaaaattatcagctagaagcagctgatcataatcatgttctgctttaa 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 agtttctactttgaaaattatcagctagaagcagctgatcataatcatgttctgctttga 320
Query: 121 agcatgttctttaccctccactagaattgatagtttgtttttatcttttcattttcacga 180
||||| | |||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct: 321 agcatctgctttaccctccactagaattgatattttgtttttatcttttcgttttcttga 380
Query: 181 ctggaaggtttttt-gttgttactgatattgtaagttggcagagtgctggttccccctcc 239
|||||||||||||| |||||||||| |||||||||||||||||||||||| ||||
Sbjct: 381 ctggaaggtttttttgttgttactggtattgtaagttggcagagtgctgg------ctcc 434
Query: 240 cccgccccccccatcagtgaggccctggattcagtcccagctctgaagaaaaattgatgt 299
|| |||||||||| |||||||||||| |||||| |||||||||| |||||
Sbjct: 435 cc----------atcagtgaggtcctggattcagtaccagctttgaagaaaaacagatgt 484
Query: 300 acttgaaaacttgtttttgaacctcgatattgtttatctggg 341
|||||||||||||||||||||||||||||||||| |||||||
Sbjct: 485 acttgaaaacttgtttttgaacctcgatattgttcatctggg 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 742
Length adjustment: 9
Effective length of query: 332
Effective length of database: 733
Effective search space: 243356
Effective search space used: 243356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_m07.g1 MSMg01no477_m07.g1 CHROMAT_FILE:
MSMg01no477_m07.g1 PHD_FILE: MSMg01no477_m07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:18 2005
(585 letters)
>mm_chr5_3319545_3320530
Length = 986
Score = 924 bits (478), Expect = 0.0
Identities = 562/594 (94%), Gaps = 10/594 (1%)
Strand = Plus / Plus
Query: 1 ctctcactgggtggggctggattttccttcctaacgtgaagtactgtttctggattttca 60
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ctctccctgggtggggctggattttccttcctaacttgaagtactgtttctggattttca 260
Query: 61 tacacgagggctgcacaggaagtgactctcgggcctatatttcaggattttacagaacgt 120
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacatgagggctgcacaggaagtgactctcgggcctatatttcaggattttacagaacgt 320
Query: 121 ttaatgaagccccc-gaccacccacctaacttagttttgcccaggatttcttcccctctt 179
|||||||||||||| | |||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 321 ttaatgaagcccccgggtcacccaactaacttagttttgcccaggatttcttcccctcct 380
Query: 180 tttgttcctcaaaccagaaggaatgtctggaaggagcctgtagagtagggattctcaacc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgttcctcaaaccagaaggaatgtctggaaggagcctgtagagtagggattctcaacc 440
Query: 240 tgtttgtctcaacctcttgggcattgaatgacccattcacccgagtcgcctaagagcatc 299
||| ||||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||
Sbjct: 441 tgtgggtctcaaccccttgggcattgaatgacccgttcacctgagtcacctaagagcatc 500
Query: 300 ctaaaacagatatttacattaagatttgtaacagtagcaaaattatagctatgaagtagc 359
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaaaacagatatttatattaagatttgtaacagtagcaaaattatagctatgaagtagc 560
Query: 360 aacgaaaataattttatagttgagggtcactacaccattaggaactgtatcaaagggtca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacgaaaataattttatagttgagggtcactacaccattaggaactgtatcaaagggtca 620
Query: 420 cagtgttaggacagttcagaactcg-tggtgtagagcaaagacagctctggttctatctc 478
||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 621 cagccttaggacagttcagaac-cggtggtgtagagcaaagacagctctggttctatctc 679
Query: 479 acactaaccctctccatggctc-------atctctcttgttctctcactcaaaagctgtt 531
|||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 680 acactaaccctctccatggctctaccagtatctctctcattctctcactcaaaagctgtt 739
Query: 532 aaaaccccaaatggtccaggaagctggtcatcagagtctgaggctcaccaccta 585
|||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct: 740 aaaaccccaaatattctaggaagctggtcatcagagcctgaggctcaccaccta 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 986
Length adjustment: 10
Effective length of query: 575
Effective length of database: 976
Effective search space: 561200
Effective search space used: 561200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
