Query= MSMg01no477_o24.b1 MSMg01no477_o24.b1 CHROMAT_FILE:
MSMg01no477_o24.b1 PHD_FILE: MSMg01no477_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:31 2005
(635 letters)
>mm_chr5_142798139_142799173
Length = 1035
Score = 1096 bits (567), Expect = 0.0
Identities = 616/635 (97%), Gaps = 7/635 (1%)
Strand = Plus / Plus
Query: 3 gaattctctcctggactgcaactgaacattagggttcagaacatagcaccagatcaaccc 62
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctctcctggacagcaactgaacattagggttcagaacatagcaccagatcaaccc 262
Query: 63 ccaacatggggaggtcagaggaccacctcaggtgtttatcctcagccacctcccaccaaa 122
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccaaaatggggaggtcagaggaccacctcaggtgtttatcctcagccacctcccaccaaa 322
Query: 123 caggccagcaagctcccaggtattcccccgtctctgcctctcctctctccatctctccag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caggccagcaagctcccaggtattcccccgtctctgcctctcctctctccatctctccag 382
Query: 183 aattacaaacatgcattagcacacccaactgtttgcttgattggtcctttttt--cccca 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 383 aattacaaacacgcattagcacacccaactgtttgcttgattggtccttttttttctcca 442
Query: 241 aaatttggggtctggagagatgacttatgagttaagaacactgggtgttcttcaggagga 300
|||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 443 aaatttggggtctggaaagatgacttatgggttaagaacactgggtattcttcaggagga 502
Query: 301 catgggtttcatctcagcacccagatggcagctcactaccatctgactccagatgccctc 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 catgggtttaatctcagcacccagatggcagctcactaccatctgactccagatgccctc 562
Query: 361 ttctgacctctacacatacagatatacaggtaaaaatacataaaacaaaaaaataaagaa 420
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttctggcctctacacatacagatatacaggtaaaaatacataaaacaaaaaaataaa--- 619
Query: 421 aaaaattaacttacatatttttaaaagatttatttatttaatatatatgtgcacactgta 480
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 620 aaaaattaacttacatatttttaaaagatttatttatttaatatatatgtgtacactgta 679
Query: 481 gctgtcttcacacaccctagaagagggcatcagatcccattacagatggttgtgagccac 540
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||
Sbjct: 680 gctgtcttcacacaccctagaagagggcatcagatcccattacata--gttgtgagctac 737
Query: 541 catgtggttgctgggaattgaactcaggacctctggaagagcagtcagtgctcttaacca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 catgtggttgctgggaattgaactcaggacctctggaagagcagtcagtgctcttaacca 797
Query: 601 ttgagccatctctctagccccaatttaaatcttaa 635
|||||||||||||||||||||||||||||||||||
Sbjct: 798 ttgagccatctctctagccccaatttaaatcttaa 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_o24.g1 MSMg01no477_o24.g1 CHROMAT_FILE:
MSMg01no477_o24.g1 PHD_FILE: MSMg01no477_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:31 2005
(537 letters)
>mm_chr5_142973875_142974810
Length = 936
Score = 683 bits (353), Expect = 0.0
Identities = 383/393 (97%), Gaps = 3/393 (0%)
Strand = Plus / Minus
Query: 146 cactgggggattctaggcaggggctctatcactgagccacaccaccagccctcactgggg 205
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 933 cactgggggattctaggcaggggctctaccactgagccacaccaccagccctcactgggg 874
Query: 206 gattctaggcaggggctctaccactgagctagtctcagattctctttgattgtatgcaaa 265
||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||
Sbjct: 873 gattctaggcaggggctctaccactgagctagtctcagaccctcattgattgtaagcaaa 814
Query: 266 cattctaatgctgaggggatactaatgctcatctctgacctctcatgctaatcctctggg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 cattctaatgctgaggggatactaatgctcatctctgacctctcatgctaatcctctggg 754
Query: 326 gcattctaggcacgcaaaataatatcctcactcctgatttctgcccctgattcaccacct 385
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gcattctaggcaggcagaataatatcctcactcctgatttctgcccctgattcaccacct 694
Query: 386 tcatccattgcttgctgtccttcctaatcgagtggtagtagttaactgacctctcagaga 445
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 tcatccattgc-tgctgtccttcctaatcgagtggtagtagttaactgacctctcagaga 635
Query: 446 gttgtcagtctgttttctctgagaattgctcggtaagtaatcttacagctcctatttgtc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gttgtcagtctgttttctctgagaattgctcggtaagtaatcttacagctcctatttgtc 575
Query: 506 tgtctaaataacatactcaggcttt-ttgtcct 537
||||||||||||||||||||| ||| |||||||
Sbjct: 574 tgtctaaataacatactcagg-tttcttgtcct 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 936
Length adjustment: 10
Effective length of query: 527
Effective length of database: 926
Effective search space: 488002
Effective search space used: 488002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
