Query= MSMg01no478_d05.b1 MSMg01no478_d05.b1 CHROMAT_FILE:
MSMg01no478_d05.b1 PHD_FILE: MSMg01no478_d05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:52 2005
(639 letters)
>mm_chr5_92215649_92216688
Length = 1040
Score = 853 bits (441), Expect = 0.0
Identities = 456/461 (98%), Gaps = 1/461 (0%)
Strand = Plus / Minus
Query: 180 actatacacacaaagtttcctgctcttatagaactataatggtttaactacaaaaatgaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 actatacacacaaagtttcctgctcttatagaactataatggtttaactacaaaaatgaa 981
Query: 240 acattgcaatctccctagcaccatttcttaccatgtaactagtaaatcagtacatcttta 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 acattgcaatttccctagcaccatttcttaccatgtaactagtaaatcagtacatcttta 921
Query: 300 gattgtattttgttaggttatttgatctaaaaacttgcggtttgaattgttggcttgagt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 gattgtattttgttaggttatttgatctaaaaacttgcggtttgaattgttggcttgagt 861
Query: 360 ttcattaatgaagtcattaaccacacaaccctcctgcaagatggcggagcacaacttgac 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 860 ttcattaatgaagtcattaaccacacaaccctccagcaagatggcggagcacaacttgac 801
Query: 420 tattctcacctcttactttctggattggcttcttcaggtctttctgctctttgagtgcct 479
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 800 tattctcacgtcttactttctggattggcttcttcaggtctttctgctccttgagtgcct 741
Query: 480 ctctgtgaaggagatatataacgaagagtaattattatgagagaaatcagatctttgtga 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctctgtgaaggagatatataacgaagagtaattattatgagagaaatcagatctttgtga 681
Query: 540 tacctgcatcatagactttgctgtggatgtacaaaaaccttcattccagtgacatcctca 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tacctgcatcatagactttgctgtggatgtacaaaaaccttcattccagtgacatcctca 621
Query: 600 tgcttcttgagg-aaaaaaaaatggctgtcatgcaactgaa 639
|||||||||||| ||||||||||||||||||||||||||||
Sbjct: 620 tgcttcttgaggaaaaaaaaaatggctgtcatgcaactgaa 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1040
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1030
Effective search space: 647870
Effective search space used: 647870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_d05.g1 MSMg01no478_d05.g1 CHROMAT_FILE:
MSMg01no478_d05.g1 PHD_FILE: MSMg01no478_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:52 2005
(660 letters)
>mm_chr5_92076116_92077175
Length = 1060
Score = 1253 bits (648), Expect = 0.0
Identities = 657/660 (99%)
Strand = Plus / Plus
Query: 1 cagagaggtttctggcacgaacaggaccactgtctttgaggaaggctctcactaggagct 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagagaggtttctggcacaaacaggaccactgtctttgaggaaggctctcactaggagct 260
Query: 61 aaatttgcttttacctacagctcagacttcacaagttgccagaactgtgaaaaatacatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaatttgcttttacctacagctcagacttcacaagttgccagaactgtgaaaaatacatt 320
Query: 121 tcaattatttatgagccaccagtctattgaccttcgctctattgcctgaatggaagaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaattatttatgagccaccagtctattgaccttcgctctattgcctgaatggaagaaga 380
Query: 181 ctccagctaaggtttaataaggaaaagagagtcctggtaagctgggccatggcattaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccagctaaggtttaataaggaaaagagagtcctggtaagctgggccatggcattaatg 440
Query: 241 taagtcagtgagcatggatcccactgggtcactgaggtcctaaatacaatggttatcagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taagtcagtgagcatggatcccactgggtcactgaggtcctaaatacaatggttatcagg 500
Query: 301 ggtacatggagatgctaagtaccttcatctccctgaacatctcacccttacgtaatcaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggtacatggagatgctaagtaccttcatctccctgaacatctcacccttacgtaatcaca 560
Query: 361 aagaccattttatttcctttgctctctatattctccaacacctcatcctgttggagattt 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 561 aagaccattttatttcctttgctctctatattctctaacacctcatcctgttggagattt 620
Query: 421 cagcttcttaaagtgagagctaagcgtctctgttctgtgaactgggactgttagactacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagcttcttaaagtgagagctaagcgtctctgttctgtgaactgggactgttagactacc 680
Query: 481 gagtaaatgttcagagtcccttgaatctcctctgctgaaaacaaacacctgcccacttct 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 gagtaaatgttcagagtcccttgaatctcctctgctgaaaacaaacacctgctcacttct 740
Query: 541 ctagccttatgaaatcctagaaggcccataagtgacaatatcttcaccttgccatcctgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctagccttatgaaatcctagaaggcccataagtgacaatatcttcaccttgccatcctgg 800
Query: 601 gttttttgcctctccccaagaataagccatggtattccctgggatccaaaattattgatc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gttttttgcctctccccaagaataagccatggtattccctgggatccaaaattattgatc 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space: 682500
Effective search space used: 682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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