BAC Information

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BAC

Clone NameMSMg01-478G15
Chromosome5 (Build37)
Map Location 103,981,459 - 103,981,845
singlet/doubletsinglet
Overlap genePtpn13
Upstream geneArhgap24, Mapk10, LOC666563, 4930429D17Rik, LOC100041039, 1700021F02Rik, LOC100041049
Downstream geneSlc10a6, 1700016H13Rik, Aff1, Klhl8, Hsd17b13, EG666629, Hsd17b11, Nudt9, Sparcl1, LOC100041136, Dspp, Dmp1, LOC100041145, Ibsp, Mepe, Spp1, Pkd2, BC005561, LOC100042165, LOC100041172, D930016D06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478G15.T7 (MSMg01no478_g15.b1)MSMg01-478G15.TJ (MSMg01no478_g15.g1)
ACCAG559536AG559537
length728733
length of high quality
(start - end)
299 (334 - 632)388 (311 - 698)
definitionCHROMAT_FILE: MSMg01no478_g15.b1 PHD_FILE: MSMg01no478_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:08 2005CHROMAT_FILE: MSMg01no478_g15.g1 PHD_FILE: MSMg01no478_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCAAAGGAGCAGATTCGGACCTGCGGNGNGGAANNCNCNATTTC
GNGACCCGCGGGAAAAGAGGGANNCNNANGNANGGNAGGGAGNNNNANGG
NGGCCCANAAAAGAGAGNNCGANCNNGGGCNCCGGNAGAGAGCANCAGCA
GCCGAGGGGAAAAAGNNCANNACAACNANANAGGCANANCNANACACGGA
ANNANGNGCANNANACNNNNNAAAAAGNAAACTTTTCACGCTATGATCCC
TACAGCCTTTTCAGCCATCCACATTGTTATTTTACCTGTCTCCCTCCCTT
TTTTTTTTCCNCCNNCNCNCNNCNCNANACANNCCCCCCTTTCACATGTC
CCCTATCAGATCACTAACATTCTGCTACCCCCCCATGTCCCTCGTCCTCC
TCCCTCCTTCTGCATCGGCCTTCCTCCTCCCTCCCCAAGGAGCCCCACCG
TCCCCCATTTTTATGATCAGATGTCTTATACCCTGCCATTCTCTCGATCT
TTCCCCAGCACCCCTATCCTGGCAATTGTCCCATTTTACTTGCCTGGGTT
CTGGAGTCACTCCAGGGTACGTACTCACATCTGAAGCTTTGGAGCTAGGA
GCCCTAATGAGAGAGAATATGAAAGATTGTCTTCCTGTGTCTGGCTGGCC
TCGCCCCTCACTCATTCTGATCTTTCCTAGGTCCATCTGCTTGTCTGCAA
AATTCATGGTTTTATTTATTTATTTATN
TGAGAGGCCTGGNGGNCGCCCTTTCAAAACAGGGGGGTGAACTATAGAAT
GCCCAAAGAGGGCTAGGCAAACACGGGCTACAAAGGAGACTGTCTTTAGA
AACTATCCCCCACATAAATAATTGGGTGGTTGTACTACTGTACCACAGAT
ATAACTGGGTGGGGGTACAGCAGCACCAAGCAGACCAAGACAAACCCCTC
CTTCTTTAGTAATGTAATTGAGAGGGGAGCCTGGAGTACACGCTGGTAAA
ACTTCTGGCTTGTTTGTGTTTTGTCTTTTGTTAAAGTAGCAGGATAGAAT
ATTTTTTTATCATGATAAAATGAATCTAGCTTCCTGAAGAACAATATTAC
GTAACCCCATTTCAGTTTTGGAAAACAAACCAGACCAAGACATCCTTCTT
TGGTTGGTCAGCACTTAAGGTGACATTCCGCATCGTGAGCTGTTTTATCA
CCCTGACCTCTCATAGCACAGGTATAACCAGGCATTTTCTCACTGGGTGT
TTAATACTTGTCTCCTCTGATAAAAGCTTACTTTCCATGAAGCCACGGGC
TCTGTATTTTGTACGTTCTACACATGCAATAAATATCTGAACCATGGATC
CATTTTCCATAGAACATCTATTAGAAGAAAATTAGAATCCTGTAAAGGAA
AATATGAATTTACTCCGAATTCACCTTTTCTTCTTTCCTTTTTCAGCCAT
AGAGAATCATGAGACTTTAAGAAGAAAGTGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_g15.g1 MSMg01no478_g15.g1 CHROMAT_FILE:
MSMg01no478_g15.g1 PHD_FILE: MSMg01no478_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:08 2005
         (388 letters)



>mm_chr5_103981259_103982045
          Length = 787

 Score =  642 bits (332), Expect = 0.0
 Identities = 374/388 (96%), Gaps = 1/388 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgataaaatgaatctagcttcctgaagaacaatattacgtaaccccatttcagttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 catgataaaatgaatctagcttcctgaagaacaatattacgtaaccccatttcagttttg 528

                                                                       
Query: 61  gaaaacaaaccagaccaagacatccttctttggttggtcagcacttaaggtgacattccg 120
           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 527 gaaaacaaaccagaccaagacatccttctttggtaggtgagcacttaaggtgacattccg 468

                                                                       
Query: 121 catcgtgagctgttttatcaccctgacctctcatagcacaggtataaccaggcattttct 180
           |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 467 catcgtgagctgttttatcaccctaacctctcatagcacagctataaccaggcattttct 408

                                                                       
Query: 181 cactgggtgtttaatacttgtctcctctgataaaagcttactttccatgaagccacgggc 240
           ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 407 cactgggtgtttaatacttgtctcctctggtaaaagcttactttccacgaagccacgggc 348

                                                                       
Query: 241 tctgtattttgtacgttctacacatgcaataaatatctgaaccatggatccattttccat 300
           |||||||||||||||||||||||||| |||||||||||| || ||||| || ||||||||
Sbjct: 347 tctgtattttgtacgttctacacatgtaataaatatctgcacaatggaaccgttttccat 288

                                                                       
Query: 301 agaacatctattagaagaaaattagaatcctgtaaaggaaaatatgaatttactccgaat 360
           ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 287 agaacatctgttagaagaaaattagaatcctgtaaagggaaatatgaatttactccgaat 228

                                       
Query: 361 tcaccttttcttctttcctttttcagcc 388
           ||||||||| ||||||||||||||||||
Sbjct: 227 tcacctttt-ttctttcctttttcagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 787
Length adjustment: 9
Effective length of query: 379
Effective length of database: 778
Effective search space:   294862
Effective search space used:   294862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)