BAC Information

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BAC

Clone NameMSMg01-478G23
Chromosome5 (Build37)
Map Location 143,699,733 - 143,699,974
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666727, Foxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb
Downstream geneFscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478G23.T7 (MSMg01no478_g23.b1)MSMg01-478G23.TJ (MSMg01no478_g23.g1)
ACCAG559552AG559553
length736787
length of high quality
(start - end)
243 (64 - 306)78 (65 - 142)
definitionCHROMAT_FILE: MSMg01no478_g23.b1 PHD_FILE: MSMg01no478_g23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:09 2005CHROMAT_FILE: MSMg01no478_g23.g1 PHD_FILE: MSMg01no478_g23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCGCTAAACGAGNCACAATTTCCTAGCTGCNCGGAANCAGCAGAATAA
CAACAGACGGGTCTGACCCGGACAGAGGCGAAAGGCTTCTGCAAATTTTG
GTTTTCTCAATCCAGTGAGATCCAGGAAAGCAAGATTTTCCAACTCCTAC
AAGTCGAAGCAGCCACAGTCCCTTCTCTGTGCCTACGTGGTGCGTGGGAG
CCCAGAGAAGCTGCGAACTTTTGTGAAATCACACAGCACTCTAGTAAACC
CAGAGTCTCTTAAACCAAAGCAGGGAAAACGGAGTTGGTGTCTTGGGATA
CATTTTGATGNTTAATCCATGCGGGTGGGGTCTGAATCAGCTGAAAAGTG
TGTGGTCCCTGTCCTTAGGAGGCTGAGGGAGGGGCTGGAGAGATGGCTCA
ATGGCTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCA
GCAACCACATGGTGGCTCACAACTATCTGTGATGAGATCCAATGTATGCT
TCTGGTGTGTGTCTGAAGATAGCTACAGTGTACTCATATAAATACAAATA
AATAAATCTTTGGGAAAAATAAAAAAAGGGGAGGCTGAGGGAGAATGCAT
GATACGGGTCTGAGGCCAGCCTGTAACATACCTATAATCCCAGTTCTCTG
TAGGCAATGAGAGGTTGATCTCTGTAAGTTCAAGGTTAGCCTAGTCTACA
TAGGGAGCTCTAGGACAGGAAGGACTACTCTGAGAG
GTGGCCTGGNGGACGCCTGGTTCCTACCTTGANNTGACCTATAGAAGTTT
CCACGAAGTGTCGGGGCTACACCATGAGACCCTGGAAGAGAGAGGGGGTG
GAGAGAGAGGGTGGAGAGAGAGGAGAGAGGAGGAGGATAGAGGACGAATA
GGATGAGGAGGGACGGGGGTAGGGATAGGTGATGGATATATTATGATGCA
CTGAGTTGAACACCTGTTCCAGCAGTTACTAGCATCTTTTCTTCTATACA
ACCCTGGTTCTGTTCCCAGCAACCTTTTGCTATACTCTCAGTCGCCTGTA
TCTCCTTTTTTTTTTATTCCAACACCCTATTCTGACCTTCTGGTTCTCTT
TTGTTCTTACACTCACTCATTCTGGTCATTTTTCCTAATGCTTGTTTTGT
TTTCCCCCCCCGACTATGCTTCCCTGGCGCGTCTTCCTTTTTCCCCTCTC
TTGTGGTTTCCGTTTAGCTCATTGTCCTCTCTTGTTCTCATTTTTTCCTT
TTTTGTATGGTTTTTTCTTGTATGTATTCTCTTTTCTCCATGTTCTCTTT
CTTTTTATTTTTGTCTTCCTCTCTTTTCCTTTCTTTATCTTCTCCCCTTT
CTCTTTTCTTCGTATCGCTCTATATTTATCTCCCCGTTGTTTTTTTTTTT
TCTCCTTTCTCTTTTTTTTTTTCTCCCCTCTTCTCTACTTTTTTTTTTTC
TTTTCTTTTACCTCTCCTTTTTTCTCTCTTCCTGGTCTCTCGCTCTTTTT
TTTCTTTCATATTTTCCTTTCTTCTTTTTTTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_g23.b1 MSMg01no478_g23.b1 CHROMAT_FILE:
MSMg01no478_g23.b1 PHD_FILE: MSMg01no478_g23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:09 2005
         (243 letters)



>mm_chr5_143699533_143700175
          Length = 643

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacccggacagaggcgaaaggcttctgcaaattttggttttctcaatccagtgagatcc 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 442 tgacccggacagaggcgaaaggcttctgcaaattttggttttctaaatccagtgagatcc 383

                                                                       
Query: 61  aggaaagcaagattttccaactcctacaagtcgaagcagccacagtcccttctctgtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aggaaagcaagattttccaactcctacaagtcgaagcagccacagtcccttctctgtgcc 323

                                                                       
Query: 121 tacgtggtgcgtgggagcccagagaagctgcgaacttttgtgaaatcacacagcactcta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 322 tacgtggtgcgtgggagcccagagaagctgcgaacttttgtgaaatcacacagcactcga 263

                                                                       
Query: 181 gtaaacccagagtctcttaaaccaaagcagggaaaacggagttggtgtcttgggatacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtaaacccagagtctcttaaaccaaagcagggaaaacggagttggtgtcttgggatacat 203

             
Query: 241 tt 242
           ||
Sbjct: 202 tt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)