XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
TGTTGCTCACAAATCAAGGGTGGTAGGGAAGGCATGGCAGCTGGTCACGT
TGCATCCTCGGCCAAGAAGCAGAGAGAGATGGATGCTGGAACTCAGTTCA
CTGTCTCCTTTCCGTTCAGTCTGTGACCCTGTCCTATAGGATGGGGTTGC
CCACTTTCAGGGTGAATCTTCCCTCCTCAGTTAAGTGTCTCTAGTTGTGT
CTTCTAGGTGATTCTACAGCCCATCAAGTTGACAGTATTAAACACCACAG
ACACACCTGAGTCCTGATAGCCCCGTCCACCAACCCTAAATATTCTCAGG
ACCAACCTTCAATTCCTTTACCCATTCATCTGACTAAACAGTTTGGCTTG
AGAATTCATATGAACCTGTCTCGTTGTTCTTGGCAGTGTAGGAGTCCTGT
AGCTGAAATTTCAATCGTCCCCCATAGACTTACATGTTCTAACACTTGGT
CCCCAGCAGGTGTCGCTATTTTATTTTTAAAGCTGCTCAACCTTTAGAAG
GTGGCACTTTGCTAGAGGAAATGAGTCACTGGGGGTGGGCCTTGATGTTT
TATAGCCCAACCTCACATCTGCTCTCCCTTTGCTGAGTATAAATACAATG
CGACCTCCAGGTCTTGCTCCTTTCCCTTCCATGATGGGCTGTGCCATTGA
AGAGTGAGTTTAAACAAACCCTTCCTCCCTTAAGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTACACACAGAAATTCATCTTCAGTGGGATGTCAGTGGCTATGGGA
TTCCAGGTTGTTAGGCTCTAGGTTTAATGGCCTTTCTTTTTATATTTTAT
TTATTAAGGATATTTGTTGTGTGTGTGTGTATGTATGTGCACATGCCATG
ACATGCATGTAAAAATCTGAAGACAGACTGTGGGAGGAGTCAGTTTTCTT
TTCCACCAGGTGGGGTCCTGGGGATCAAACTCAGGTTGGTTGTCCCTTTG
TGGCAAGCCCTTTTTTTTAGTGAGTCCTCTTGCCAGCTCTTTGAATGTGC
ATTTCTTCTGTCCCAAACTTAGCGTGGACTCATGGCTCCAGCCAGAAACA
GAAAAGAAAGCTAGAGGGGAAGGAGGAAGGACAGACATTGTGTTTTCATT
GGTAGTGGAAGCAATTTTCTAACGATAATGATGAAACACAGTAAGTGCTA
TCTCATGTAATGGAGTTGATTACCCATTTTCTAGTCTTTCCTAAACAGTA
GGTTATGAGCCATATACAGTGGTGGGTGATGTTATTGTTTTCCCTGTTCC
TCAAATAAAGAAGCATGTAATGGCTTCTTAAAGGTTTGAGGGGGTGGTTG
ATAGTCTGTGAATTGATTTGATTGAGCGAAGAGCAGAAGAGGTCAAAATT
TCTACCAACTGTCAGTGTGCAAACAGCTCTTACCTCCCAGA

Query= MSMg01no478_j09.b1 MSMg01no478_j09.b1 CHROMAT_FILE:
MSMg01no478_j09.b1 PHD_FILE: MSMg01no478_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:20 2005
         (416 letters)



>mm_chr5_131284446_131285261
          Length = 816

 Score =  797 bits (412), Expect = 0.0
 Identities = 415/416 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagccccgtccaccaaccctaaatattctcaggaccaaccttcaattcctttacccatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagccccgtccaccaaccctaaatattctcaggaccaaccttcaattcctttacccatt 260

                                                                       
Query: 61  catctgactaaacagtttggcttgagaattcatatgaacctgtctcgttgttcttggcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catctgactaaacagtttggcttgagaattcatatgaacctgtctcgttgttcttggcag 320

                                                                       
Query: 121 tgtaggagtcctgtagctgaaatttcaatcgtcccccatagacttacatgttctaacact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaggagtcctgtagctgaaatttcaatcgtcccccatagacttacatgttctaacact 380

                                                                       
Query: 181 tggtccccagcaggtgtcgctattttatttttaaagctgctcaacctttagaaggtggca 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tggtccccagcaggtgtcgctattttgtttttaaagctgctcaacctttagaaggtggca 440

                                                                       
Query: 241 ctttgctagaggaaatgagtcactgggggtgggccttgatgttttatagcccaacctcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttgctagaggaaatgagtcactgggggtgggccttgatgttttatagcccaacctcac 500

                                                                       
Query: 301 atctgctctccctttgctgagtataaatacaatgcgacctccaggtcttgctcctttccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctgctctccctttgctgagtataaatacaatgcgacctccaggtcttgctcctttccc 560

                                                                   
Query: 361 ttccatgatgggctgtgccattgaagagtgagtttaaacaaacccttcctccctta 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttccatgatgggctgtgccattgaagagtgagtttaaacaaacccttcctccctta 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no478_j09.g1 MSMg01no478_j09.g1 CHROMAT_FILE:
MSMg01no478_j09.g1 PHD_FILE: MSMg01no478_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:20 2005
         (614 letters)



>mm_chr5_131452651_131453664
          Length = 1014

 Score =  963 bits (498), Expect = 0.0
 Identities = 531/542 (97%)
 Strand = Plus / Minus

                                                                        
Query: 73   ttatattttatttattaaggatatttgttgtgtgtgtgtgtatgtatgtgcacatgccat 132
            ||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 1014 ttatattttatttattaaggatatttgttgtgtgtgtgtatatatgtgtgcacatgccat 955

                                                                        
Query: 133  gacatgcatgtaaaaatctgaagacagactgtgggaggagtcagttttcttttccaccag 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954  gacatgcatgtaaaaatctgaagacagactgtgggaggagtcagttttcttttccaccag 895

                                                                        
Query: 193  gtggggtcctggggatcaaactcaggttggttgtccctttgtggcaagccctttttttta 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   |
Sbjct: 894  gtggggtcctggggatcaaactcaggttggttgtccctttgtggcaagccccttttccca 835

                                                                        
Query: 253  gtgagtcctcttgccagctctttgaatgtgcatttcttctgtcccaaacttagcgtggac 312
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 834  ctgagtcctcttgccagctctttgaatgtgcatttcttctgtcccaaacttagcatggac 775

                                                                        
Query: 313  tcatggctccagccagaaacagaaaagaaagctagaggggaaggaggaaggacagacatt 372
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774  tcatggcttcagccagaaacagaaaagaaagctagaggggaaggaggaaggacagacatt 715

                                                                        
Query: 373  gtgttttcattggtagtggaagcaattttctaacgataatgatgaaacacagtaagtgct 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  gtgttttcattggtagtggaagcaattttctaacgataatgatgaaacacagtaagtgct 655

                                                                        
Query: 433  atctcatgtaatggagttgattacccattttctagtctttcctaaacagtaggttatgag 492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654  atctcatgtaatggagttgattacccattttctagtctttcctaaacagtaggttatgag 595

                                                                        
Query: 493  ccatatacagtggtgggtgatgttattgttttccctgttcctcaaataaagaagcatgta 552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594  ccatatacagtggtgggtgatgttattgttttccctgttcctcaaataaagaagcatgta 535

                                                                        
Query: 553  atggcttcttaaaggtttgagggggtggttgatagtctgtgaattgatttgattgagcga 612
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 534  atggcttcttaaaggtttgagggggtggttgatagtctgtgaattgatttgattgagaga 475

              
Query: 613  ag 614
            ||
Sbjct: 474  ag 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)