Query= MSMg01no478_l18.b1 MSMg01no478_l18.b1 CHROMAT_FILE:
MSMg01no478_l18.b1 PHD_FILE: MSMg01no478_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:31 2005
(525 letters)
>mm_chr5_117165967_117166888
Length = 922
Score = 944 bits (488), Expect = 0.0
Identities = 515/528 (97%), Gaps = 9/528 (1%)
Strand = Plus / Plus
Query: 1 attctactctgacatggtgtgagacagcccataggagggtgcatgtttagaatctatcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctactctgacatggtgtgagacagcccataggagggtgcatgtttagaatctatcaa 260
Query: 61 aggtaattcttattgtatgcggctttccaaaagcagcgtgcttggattgcacacaatagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtaattcttattgtatgcggctttccaaaagcagcgtgcttggattgcacacaatagc 320
Query: 121 aaaggtgttgggcagggcttgtggctcggcatttaagcatacctgctgttctttctaaag 180
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagggggtgggcagggcttgtggctcggcatttaagcatacctgctgttctttctaaag 380
Query: 181 gaccgtcctttttactacc---tgtagctccagcttaattggatctgaacatcctgactc 237
||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccgtccttt--acaaccacctgtagctccagcttaattggatctgaacatcctgactc 438
Query: 238 ccgtgagcactgccacacattatgcataactcacagtcaggcataggcacatagattaaa 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccgtgagcactgccacacattatgcataactcacagtcaggcataggcacatagattaaa 498
Query: 298 aaaaaaaaaaaagaataacttctgatggaagaatttaaccctccaaatcaatagataata 357
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aaaaaaaa----gaataacttctgatggaagaatttaaccctccaaatcaatagataata 554
Query: 358 atgggatgatgtcttcttttcttctcctgttgctatgacaaaatgacctaacaaaagcaa 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 atgggatgatgtcttcttttcttctcctgttgctatgacaaaatgacctaacaaaagcaa 614
Query: 418 tgtgagggaggaagagttgattctggctcacagttcaaggtatgctctattatggctcag 477
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 615 tgtgagggaggaagagttgattctggctcacagttcaaggtacgctctattatggctcag 674
Query: 478 aagtcaaggcaacagtagcttgaagcagctggtcatgtgatcgcatca 525
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 aagtcaaggcaacagtagcttgaagcagctggtcatgtgatcgcatca 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 922
Length adjustment: 10
Effective length of query: 515
Effective length of database: 912
Effective search space: 469680
Effective search space used: 469680
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_l18.g1 MSMg01no478_l18.g1 CHROMAT_FILE:
MSMg01no478_l18.g1 PHD_FILE: MSMg01no478_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:31 2005
(354 letters)
>mm_chr5_117364480_117365233
Length = 754
Score = 638 bits (330), Expect = 0.0
Identities = 348/354 (98%)
Strand = Plus / Minus
Query: 1 gtctgagacacctgggtgagctttaggacaaatagagggcttgtgttccctgagtaccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtctgagacacctgggtgagctttaggacaaatagagggcttgtgttccctgagtaccat 495
Query: 61 gaccttccaattgagaaaaaaagaaatgagactcaatattaatagttcttaccaactgct 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ggccttccaattgagaaaaaaagaaatgagactcaatattaatagttcttaccaactgct 435
Query: 121 gggtgattacagagttgaaaaggtgcaggaggccttcgcgacagaattgctatgtggaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gggtgattacagagttgaaaaggtgcaggaggccttcgcgacagaattgctatgtggaga 375
Query: 181 agcaaaaatgatgggaaaggaaagggctgtgggctgagcggagtagcggcttgaattaag 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 374 agcaaaaatgatgggaaagggaagggctgtgggctgagcggagtagcggcttgaattaag 315
Query: 241 caaggttgccatttgagagcagggaccacatattctctgttatcaggtgaattgagccct 300
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 314 taaggttgtcatttgagagcagggcccacatattctctgttatcaggtgaattgagccct 255
Query: 301 tcggttgatcaaaatgtcccctaggttcacagtggggaagttcatcctcagagc 354
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcgtttgatcaaaatgtcccctaggttcacagtggggaagttcatcctcagagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 354
Length of database: 754
Length adjustment: 9
Effective length of query: 345
Effective length of database: 745
Effective search space: 257025
Effective search space used: 257025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
