BAC Information

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BAC

Clone NameMSMg01-478M12
Chromosome5 (Build37)
Map Location 76,151,724 - 76,337,358
singlet/doubletdoublet
Overlap geneEG664874, Kdr
Upstream geneEG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169, Kit
Downstream geneGabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478M12.T7 (MSMg01no478_m12.b1)MSMg01-478M12.TJ (MSMg01no478_m12.g1)
ACCAG559816AG559817
length717727
length of high quality
(start - end)
273 (357 - 629)383 (319 - 701)
definitionCHROMAT_FILE: MSMg01no478_m12.b1 PHD_FILE: MSMg01no478_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:34 2005CHROMAT_FILE: MSMg01no478_m12.g1 PHD_FILE: MSMg01no478_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,151,724 - 76,151,995)(76,336,976 - 76,337,358)
sequence
GGTAGGGGGGGGGGAGGAGGCCATTTCGGAGCAGCGGGNGGAAGNGGCGT
TTCGNGACGTGAGGGCACAGNCNGGGGANAGAAGCCCGAACGACAGCACC
GCNACAACCCCGGCCAAGCCGAGGGGCAGAAGGAAGGGANCAGGGANGCN
GGAAGNCCAGGCAAANCCAGGGGGACGAAACGCAGGGCNCAGCAGNGCGG
GACACCCNCGCANCNCCNGCGGCAGGAGGCCAGTGTTTTTTCCATGAGTC
TCCGGGTGAGATCCACAGGACAGCTGAGCTGTAGGTAGGGGTTTTCAGGT
TTTTTTTTTTATNNNCCCAGGANGNCANNANCCCCGCAGAACAAATGCCT
CCCCAGGAAGCCGCTCTCAGTCCTTCTAACCAAATAAGCATGTTCACACT
TCCCAAGATCTCTGATTATGTGCCTGAATAGGAAATTCAGTTTCTGATTA
ATAAGCATCTTTGCCTTTATGTTTCTACAGAAAGCATTTTGTGCTAATAA
TAAGATGCTTAATAATGAGATGCCCCTCAATGGAAGGGAACCGGCAATGG
GGAAACAATGTCGGACCATGTTTAAATGTCACTGTTTTAAAAATGCCCAC
TTGAAAGAATTGTTCCCAAATCACTAGGAGTTGTTTTTTTTATGATTTTT
TGGNTCTTTTTTTCCCTTCTCTCTCTCTCATTTTACTTGTGTTTCGGGTC
TGGTTTGCATTTTTTCC
TGTGCGTAGGCCTGGNGGNCGCCAGGTCAAAAACGGGGGAGGNGACACTA
TAGAATGACAACACGGAGGTCTAAGCCTTGTGGGAGCAAATAGCTAAAAT
GCCACAGTTCCTTAATCTCTGGGAAGAAAGAGAGAGGGAGAGAGAGCCGT
GTTACTGAGACATCTGTATTAAAATGGTCCCCATGTACACTTTTATTAAG
GTGAATTAAATGGCTTAGGAGAGACTCAGGAAGAAAGGATTCTGTGCAAA
TAGGAAACCTGCTGAAGGTTCTCTGGTGTAGCTGCAGCATGCCATAGGCT
GTGTCCTGCATGTTTTTTGCAACTACAGCACAGAAGTCTCTCCCCAGTCT
GAGTTGCAGCATTGTGTGTTCCTAATGGAATGCTTGACTTTATTGAAAAC
AAATGCCACTCAGTCCAGTCCCGGTCCGTGGACCAGGTAGCTCTCTAGGC
TCTCAGTTAATACCTGCCCATGAGGCACATGGTGATGGGGTTTCCCACAA
CGCAGTCTTAGCATTGCCTTTCCCAAGCCTAAGACAAGTTGGCATTGTCC
CCTCTCTTTGGGCATTGTCCTGCTGCTGCTAGAACCCCTGTCAGCATGGG
AGAGACTTGTCTTCCTCAGTGTCCTCAAGCTGCAGGGGCAGCTGTTTCCT
GTGGGAGGCATTGGCCCAGGTGCTACGCTGCCTGGAGGTTAGAGAGACCT
AAGTATGGTTTGCCCTGAGGAATCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_m12.b1 MSMg01no478_m12.b1 CHROMAT_FILE:
MSMg01no478_m12.b1 PHD_FILE: MSMg01no478_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:34 2005
         (273 letters)



>mm_chr5_76151524_76152196
          Length = 673

 Score =  518 bits (268), Expect = e-151
 Identities = 271/272 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaagccgctctcagtccttctaaccaaataagcatgttcacacttcccaagatctctgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagccgctctcagtccttctaaccaaataagcatgttcacacttcccaagatctctgat 260

                                                                       
Query: 61  tatgtgcctgaataggaaattcagtttctgattaataagcatctttgcctttatgtttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgtgcctgaataggaaattcagtttctgattaataagcatctttgcctttatgtttct 320

                                                                       
Query: 121 acagaaagcattttgtgctaataataagatgcttaataatgagatgcccctcaatggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 acagaaagcattttgtgctaataataagatgcttaataatgagatgcccatcaatggaag 380

                                                                       
Query: 181 ggaaccggcaatggggaaacaatgtcggaccatgtttaaatgtcactgttttaaaaatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaaccggcaatggggaaacaatgtcggaccatgtttaaatgtcactgttttaaaaatgc 440

                                           
Query: 241 ccacttgaaagaattgttcccaaatcactagg 272
           ||||||||||||||||||||||||||||||||
Sbjct: 441 ccacttgaaagaattgttcccaaatcactagg 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no478_m12.g1 MSMg01no478_m12.g1 CHROMAT_FILE:
MSMg01no478_m12.g1 PHD_FILE: MSMg01no478_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:34 2005
         (383 letters)



>mm_chr5_76336776_76337558
          Length = 783

 Score =  717 bits (371), Expect = 0.0
 Identities = 380/383 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaactacagcacagaagtctctccccagtctgagttgcagcattgtgtgttcctaatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 583 gcaactacagcacagaagtctctccccagtctgagttgcagcattgtgtgtacctaatgg 524

                                                                       
Query: 61  aatgcttgactttattgaaaacaaatgccactcagtccagtcccggtccgtggaccaggt 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 aatgctcgactttattgaaaacaaatgccactcagtccagtcccggtccgtggaccaggt 464

                                                                       
Query: 121 agctctctaggctctcagttaatacctgcccatgaggcacatggtgatggggtttcccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 agctctctaggctctcagttaatacctgcccatgaggcacatggtgatggggtttcccac 404

                                                                       
Query: 181 aacgcagtcttagcattgcctttcccaagcctaagacaagttggcattgtcccctctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aacgcagtcttagcattgcctttcccaagcctaagacaagttggcattgtcccctctctt 344

                                                                       
Query: 241 tgggcattgtcctgctgctgctagaacccctgtcagcatgggagagacttgtcttcctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 tgggcattgtcctgctgctgctagaacccctgtcagcatgggagagacttgtcttcctca 284

                                                                       
Query: 301 gtgtcctcaagctgcaggggcagctgtttcctgtgggaggcattggcccaggtgctacgc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 283 gtgtcctcaagctgcaggggcagctgtttcctgtgggaggcattggcccaggtgctgcgc 224

                                  
Query: 361 tgcctggaggttagagagaccta 383
           |||||||||||||||||||||||
Sbjct: 223 tgcctggaggttagagagaccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)