Query= MSMg01no479_b16.b1 MSMg01no479_b16.b1 CHROMAT_FILE:
MSMg01no479_b16.b1 PHD_FILE: MSMg01no479_b16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:59 2005
(676 letters)
>mm_chr5_134765840_134766915
Length = 1076
Score = 1118 bits (578), Expect = 0.0
Identities = 644/680 (94%), Gaps = 24/680 (3%)
Strand = Plus / Plus
Query: 1 ttctgacctctgtgagtagtgcacacatgtggtccatagacacatggggagacacaaaaa 60
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ttctgacctctgtgggcagtgcacacatgtggtccatagacacatggggagacacaaaaa 258
Query: 61 ctcacatacataaaataaaaataaatcttaaaaaaaaaaa--ggcggtttggcggtcatc 118
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 259 ctcacatacataaaataaaaataaatcttaaaaaaaaaaaaaggcggtttggcggtcatc 318
Query: 119 caggggtgccacaggagactgtagctcaagacaccagggctaggcacggagctcagctgt 178
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 319 caggggtgccacaggagactgtagctcaagacaccagggctaggcatgaagctcagctgt 378
Query: 179 gcttgccaatcatgcacggagctcggggttcaacctccgggggaccgagaactcaaggtc 238
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 379 gcttgccaatcatgcacggagctcggggttcaacctccgggggactgagaactcagggtc 438
Query: 239 ctcctttgctgcaaagcaagtctgaggtcacatgagaccctgtctgcataaataaatgaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctcctttgctgcaaagcaagtctgaggtcacatgagaccctgtctgcataaataaatgaa 498
Query: 299 ctaacatataaccagggtttaaattttaccagaaaaaaaaa--tcaagataccaacattg 356
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 499 ctaacatataaccagggtttaaattttaccagaaaaaaaaaaatcaagataccaagattg 558
Query: 357 taagtatggacatgggtggaatgcagcatcctttctgttctagggattggacgcagaatt 416
|||||||||||| ||||||| ||| ||||||||||||| |||||||||||||||||||||
Sbjct: 559 taagtatggacacgggtggattgcggcatcctttctgtcctagggattggacgcagaatt 618
Query: 417 ccatgcatactacccaggtgccctagcactgagacactgccagccccaaccccagaagga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ccatgcatactacccaggtgccctagcactgagacactgccagccccaaccccagaagga 678
Query: 477 ctaaaaatgctctggaggccaagatggcaggaacagagttcaaagcctgcacaatgaaac 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 679 ctaaaaatgctctggaggccaagatggcaggaacagagttcaaagcctgcacaatgagac 738
Query: 537 tggctaaagaggtaagaaggaagacgagagaacttgaaggaacagtagggaattaaatga 596
|||||||||||||||||||||| ||||||||||||||||||
Sbjct: 739 tggctaaagaggtaagaaggaa--------------------cagtagggaattaaatga 778
Query: 597 attaactaaacaaggctatctgcgagcactgctgaccctcgggcccctcacgcttggatc 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 attaactaaacaaggctatctgcgagcactgctgaccctcgggcccctcacgcttggatc 838
Query: 657 ttacagacaggttttatggt 676
||||||||||||||||||||
Sbjct: 839 ttacagacaggttttatggt 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_b16.g1 MSMg01no479_b16.g1 CHROMAT_FILE:
MSMg01no479_b16.g1 PHD_FILE: MSMg01no479_b16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:59 2005
(592 letters)
>mm_chr5_134910408_134911399
Length = 992
Score = 868 bits (449), Expect = 0.0
Identities = 502/525 (95%), Gaps = 10/525 (1%)
Strand = Plus / Minus
Query: 1 tcttccttcttccacctctgtcctggggattgttcccacgccatcgggctttggaggcaa 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tcttccttcttccacctcggtcctggggattgttcccacgccatcgggctttggaggcaa 461
Query: 61 gggccatctccggggatcctattttgttttgttttgaaggaatgaagcttctgtttctgt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gggccatctccggggatcctattttgttttgttttgaaggaatgaagcttctgtttctgc 401
Query: 121 ttcccaaggtagttaagtgcctgcagcagggtgccttaggtcatttatgaaacagaaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttcccaaggtagttaagtgcctgcagcagggtgccttaggtcatttatgaaacagaaaac 341
Query: 181 agtaaaaagaaaaggtcttgggtgatgttgcaggcctgtgattcatgtaggggggggg-- 238
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 340 agtaaaaagaaaaggtctggggtgatgttgcaggcctgtgattcacgtagggggggggca 281
Query: 239 ---ttttttttgctacttggcaagtgaaagaccacctttggctccaaggaactcaactgg 295
||||||||||||||||||| ||||||||| |||||||| |||||||| ||||
Sbjct: 280 gcc-----tttgctacttggcaagtgagagaccacctctggctccagggaactcagctgg 226
Query: 296 gagtccaaagatggagctcacggcgtgggctccgttcccagcaccacgggccacaaactg 355
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gagcccaaggatggagctcacggcgtgggctccgttcccagcaccacgggccacaaactg 166
Query: 356 gccatggcgacccatgcccgcaatcctagtcctcagatcagaagggtgagagttgagggc 415
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 165 gccatggcgacccatgcccgcaaccctagccctcagatcagaagggtgagagttgagggc 106
Query: 416 catccttagctacatactgagtttgaggccagcctcagctccaggagattctgtctcaca 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 catccttagctacatactgagtttgaggccagcctcagctccaggagattctgtctcaca 46
Query: 476 ggggtgggagtgtagagaaaacaaaaaaacaacacaacctgtgca 520
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 45 ggggtgggagtgtggagaaaacaaaaaaacaacacaacctgtgca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
