Query= MSMg01no479_f01.b1 MSMg01no479_f01.b1 CHROMAT_FILE:
MSMg01no479_f01.b1 PHD_FILE: MSMg01no479_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:16 2005
(705 letters)
>mm_chr5_71610425_71611529
Length = 1105
Score = 1301 bits (673), Expect = 0.0
Identities = 694/701 (99%), Gaps = 1/701 (0%)
Strand = Plus / Plus
Query: 5 gaattctccatcacttcattctttttaatataaatatgaccttcagatttaatgtctaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccatcacttcattctttttaatataaatatgaccttcagatttaatgtctaaa 264
Query: 65 atcatgaaagatgctgctatttttattgagaaaatagttattctcaagcagttttcaaac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcatgaaagatgctgctatttttattgagaaaatagttattctcaagcagttttcaaac 324
Query: 125 agttcttttgttaaaatgacatactaataacagtttttaatttgaaaacattatatgtgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agttcttttgttaaaatgacatactaataacagtttttaatttgaaaacattatatgtgg 384
Query: 185 tatattttaataatcttaatgatttctacagctttgtgatattaagctcactatttccct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tatattttaataatcttaatgatttctacagctttgtgatattaagctcactatttccct 444
Query: 245 gaggatatggaaacagagttagagagggttcaatgaacatctgaagctcctatagtgagg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaggatatggaaacagagttagagagggttcaatgaacatctgaagctcctatagtgagg 504
Query: 305 ctttcctggagaagaaaagtatagaaatacttatgccctaaataatgtacttaacaatat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctttcctggagaagaaaagtatagaaatacttatgccctaaataatgtacttaacaatat 564
Query: 365 actatttttgtgacttttcctggaaatacaggactaatatttattcatccggggtaagtg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actatttttgtgacttttcctggaaatacaggactaatatttattcatccggggtaagtg 624
Query: 425 atgcacaacagagtgaaggaatagttctacccaaatctagcttagtgcaacaatgacttt 484
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgcacaacagagcgaaggaatagttctacccaaatctagcttagtgcaacaatgacttt 684
Query: 485 attagagaaaggatgagagattacttttggaagcatgaatggggttatttacagaatgca 544
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attagagaaaggatgagagatcacttttggaagcatgaatggggttatttacagaatgca 744
Query: 545 ttatagcacctgcattaccaaaagaaccatcttactctaaatgtggtgattcataaaatc 604
||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||
Sbjct: 745 ttatagcacctgcattaccaaaaaaaacatcttactctaaatgtggagattcataaaatc 804
Query: 605 tgcaacttctctaggagctgatatcactgaacaatttacaggaagccttttttattta-t 663
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 805 tgcaacttctctaggagctgatatcactgaacaatttacaggaagccttttttaattaat 864
Query: 664 ttatttatttttattaggtattttcctcgtttacattttca 704
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ttatttatttttattaggtattttcctcgtttacattttca 905
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1105
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1095
Effective search space: 761025
Effective search space used: 761025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no479_f01.g1 MSMg01no479_f01.g1 CHROMAT_FILE:
MSMg01no479_f01.g1 PHD_FILE: MSMg01no479_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:16 2005
(593 letters)
>mm_chr5_71757960_71758946
Length = 987
Score = 986 bits (510), Expect = 0.0
Identities = 570/593 (96%), Gaps = 6/593 (1%)
Strand = Plus / Minus
Query: 1 ctaagctctatggtgataatattagctggcaagactttgagaaagtgacaggtatctgat 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 787 ctaagctctatggtgataatattagctggcaggactttgagaaagtgacaggtatctgat 728
Query: 61 cagataaatagaaccagtattcttaaaagatagacaaaatgcagcttattgatctcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 cagataaatagaaccagtattcttaaaagatagacaaaatgcagcttattgatctcttct 668
Query: 121 actatatgaggattttaaagaggaacagtgagcatgtttacataacagaagaacacttta 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 667 actatatgaggattttaaagaggaacagtgagcatgtttacataacagaagagcacttt- 609
Query: 181 aaaaagtggtttagcactgaactttcagtttaatataaatatctaaagccatttataaat 240
|||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 608 -aaaattggtttagcactgagctttcagtttaatataaatatctaaagtcatttataaat 550
Query: 241 acttcttttaatattccatttgctgtacctttctttgtcaacttactgtttagtgaaaca 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 acttcttttaatattcaatttgctgtacctttctttgtcaacttactgtttagtgaaaca 490
Query: 301 gcccccatcttgttctttccacagtgatgttatttgtacaatgaacttacagttgtaaac 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 489 gcccccatcttgttctttccacagtgatgttatttgtacaatgaatttacagttgtaaac 430
Query: 361 tgggatcagtgcacaataattgcagcataggattctgatcatagttttatctcaagtgtc 420
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 429 tgggatcagtgcacaataattgcagcatatgattctgatcatagtcttatctcaagtgtc 370
Query: 421 ttatcatgggatcatctaacttgaccaacatctcatttttttttttgcttancatgatgt 480
||||||||||||||||||||||||||||||||||||| |||| ||| | ||| ||||
Sbjct: 369 ttatcatgggatcatctaacttgaccaacatctcattgtttt----gctaagcatcatgt 314
Query: 481 aggaactaacaaaagagactataaaatgagactttgaactcttcaaactgtcaagcaagt 540
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 313 aggaactaacaaaagagactataaaatgagactttggactcttcaaattgtcaagcaagt 254
Query: 541 gtctgcaaaatcatccctgcctttttgctgtgggcagttgtagagagagctca 593
||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 253 gtctgcaaaatcatctctgcctttttgctgtgggcagttgtagagaaagctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 987
Length adjustment: 10
Effective length of query: 583
Effective length of database: 977
Effective search space: 569591
Effective search space used: 569591
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
