BAC Information

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BAC

Clone NameMSMg01-479H21
Chromosome5 (Build37)
Map Location 135,696,523 - 135,697,083
singlet/doubletsinglet
Overlap geneBaz1b
Upstream geneNcf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1, Eln, Wbscr28, Cldn13, Wbscr27, Cldn4, Cldn3, Abhd11, Stx1a, Wbscr22, Wbscr18, Vps37d, Mlxipl, Tbl2, Bcl7b, LOC100040069
Downstream geneFzd9, Fkbp6, Trim50, Nsun5, Pom121, Hip1, Ccl26l, Ccl24, Rhbdd2, Por, 2010310D06Rik, Styxl1, Mdh2, 2900083I11Rik, Hspb1, Ywhag, Srcrb4d, Zp3, Dtx2, Upk3b, 2310043J07Rik, Rasa4, Polr2j, 1200011O22Rik, Alkbh4, Tmem142b, Prkrip1, LOC269718, Sh2b2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479H21.T7 (MSMg01no479_h21.b1)MSMg01-479H21.TJ (MSMg01no479_h21.g1)
ACCAG560360AG560361
length823805
length of high quality
(start - end)		280 (45 - 324)560 (74 - 633)
definitionCHROMAT_FILE: MSMg01no479_h21.b1 PHD_FILE: MSMg01no479_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:31 2005CHROMAT_FILE: MSMg01no479_h21.g1 PHD_FILE: MSMg01no479_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:59:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGCATTTGCCTGTTTTCATTTATTTTGATGTTTTTGTTTTGGCTT
TGTTTTACACTTATTTTATTCATTCATTTGTGTGAGAGAGAGAGAGAGAG
AGAGAAGGAGAGAGAGAGAGAGAGCAGGTGCCAACAGTAAAGTCTGTCAA
CAACTTGTGAGAGTTCTTCTTCTACCATGTGGGGTCCAAGGATTGGTCAT
CAGGCTTGGCAGCAAGCACCCTCACCCACTGAGCCATCTCACAGGCTGTG
TTTTATTTTGGAGGGATGGTGGAGTGTGGTGGGGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTNNNNNTNTTTTCCCCCCCCCCCCCCCCCTCTNTTTCTCTT
CCTTTCCCCTTCCCTCTCTCTTCCCTTTTTTCCCTCTCCCTCTTTCTCCC
TTTCTCCCCTTCTTTTCTTCTTTCTTCCTTCTCCTCCTTTTCTTTTTCTT
TCCCCCCCCCTCTTCCCTCCTTTTTCCCTTTTTCCCCTCTCTTTTTCTTT
TCCTCCCTCTCTTTTTTCTTTTTTNTCTTTTTTCTTTCCTTCNNTCCCTC
CTCTCTNCCTTTCCTCCCCTCTTTTCTCTTCCTCTCTCTCCCTTTTTTCC
TCTTTTCTCTCTTTTTTCCCTCTCCTTCCCCCCTTTTTTCTTTTTTTTTT
CTTTTTCCCTCTCTCTTCCTTTCTTTTCCTTTCTTTTCCTCTTTTTTCTC
TCCCCTCCTTTTTCTTCCCCCCC

AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACAGCAATCTGTCTGCCTGTCCCTCTT
TCCCTCCCTGGTTTGAAGGTATCCACCATCACCACATGACTGGAGAAATG
AGTCAGAGGCTGGGAGTGCTTGTTGATCTCCCAGAGACCTTGGTTCCCTT
CTCAGCATACTCACATGCAGCTCACAACCATTTGTAACTTGAGCTCTAAG
GGATATGACCCCAGAGAGGCCTACAGTGCACATATATACATAAGTACAAA
GCAATTATTAACATAAATAAAAATAAATAAAAATTAATGTTATTACTTCA
CTGATGGGGGAAAAAATTATGAAGTTGAGACAGTCTCATATAGCCCAAGT
CCGTCTCCAACTTGGCTAATATGTGGAATTTTGCTCAATAAAAACAATCT
ATCAATTGAGTATTTAAGCTTTTTTGTGGTTTTTTTTGGTTGTTGTTTGA
GACAGAATTTCTCTGTGTAGCCCTGGATGTCCTGGAACTCACTCTGTAGA
CCAGGCTGGTCTTGAACCCAGAGATCCGCCTGCCTTTGCCTTCCAAGTGC
TGGGATCAAAGGCGCGCGCCACCACACCCGGCTGAGTATTAAAGTTTGTC
TGTCAAATTCTACTACAATAATGTGCAAAGGACAGCTANTTATGCCATAA
TCTTTAAATTATATCTTCCCTGATAATCATATATGCAATATAGTGGAGAT
ACCTATANGGGTAAAATCATATCTGTTTGAAAGGAAGGAANGGAGGAAAG
AGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_h21.g1 MSMg01no479_h21.g1 CHROMAT_FILE:
MSMg01no479_h21.g1 PHD_FILE: MSMg01no479_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:31 2005
         (560 letters)



>mm_chr5_135696216_135697175
          Length = 960

 Score = 1038 bits (537), Expect = 0.0
 Identities = 555/561 (98%), Gaps = 1/561 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcaatctgtctgcctgtccctctttccctccctggtttgaaggtatccaccatcacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 acagcaatctgtctgcctgtccctctttccctccctggtttgaaggtatccaccatcacc 809

                                                                       
Query: 61  acatgactggagaaatgagtcagaggctgggagtgcttgttgatctcccagagaccttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 acatgactggagaaatgagtcagaggctgggagtgcttgttgatctcccagagaccttgg 749

                                                                       
Query: 121 ttcccttctcagcatactcacatgcagctcacaaccatttgtaacttgagctctaaggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ttcccttctcagcatactcacatgcagctcacaaccatttgtaacttgagctctaaggga 689

                                                                       
Query: 181 tatgaccccagagaggcctacagtgcacatatatacataagtacaaagcaattattaaca 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 688 tatgaccccagagaggcctacagtgcacatagatacataagtacaaagcaattattaaca 629

                                                                       
Query: 241 taaataaaaataaataaaaattaatgttattacttcactgatgggggaaaaaattatgaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 taaataaaaataaataaaaattaatgttattacttcactgatgggggaaaaaattatgaa 569

                                                                       
Query: 301 gttgagacagtctcatatagcccaagtccgtctccaacttggctaatatgtggaattttg 360
           |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 568 gttgagacagtctcatatagcccaagtctgtctccaacttggttaatatgtggaattttg 509

                                                                       
Query: 361 ctcaataaaaacaatctatcaattgagtatttaagcttttttgtgg-ttttttttggttg 419
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 508 ctcaataaaaacaatctatcaattgagtatttaagcttttttgtggtttttttttgattg 449

                                                                       
Query: 420 ttgtttgagacagaatttctctgtgtagccctggatgtcctggaactcactctgtagacc 479
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 448 ttgtttgagacagaatttctctgtgtagccctggctgtcctggaactcactctgtagacc 389

                                                                       
Query: 480 aggctggtcttgaacccagagatccgcctgcctttgccttccaagtgctgggatcaaagg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 aggctggtcttgaacccagagatccgcctgcctttgccttccaagtgctgggatcaaagg 329

                                
Query: 540 cgcgcgccaccacacccggct 560
           |||||||||||||||||||||
Sbjct: 328 cgcgcgccaccacacccggct 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space:   522500
Effective search space used:   522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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