BAC Information

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BAC

Clone NameMSMg01-479O23
Chromosome5 (Build37)
Map Location 15,183,904 - 15,184,384
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-479O23.T7 (MSMg01no479_o23.b1)MSMg01-479O23.TJ (MSMg01no479_o23.g1)
ACCAG560695AG560696
length800785
length of high quality
(start - end)
470 (74 - 543)517 (77 - 593)
definitionCHROMAT_FILE: MSMg01no479_o23.b1 PHD_FILE: MSMg01no479_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:06 2005CHROMAT_FILE: MSMg01no479_o23.g1 PHD_FILE: MSMg01no479_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:00:06 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCG
GAATTCCTGATTTTCCAACACATTTAACATGAAGGGGTGTTAAATTTTAT
CAAATTATTTCTCAGAATCTAATGAGATGATCATGTGTTTTTTGTTTTTC
AGTGGATTTCTGTATGTTGAATTATCTCTGCATTTCTTGGATGAAGCCTG
CTTGATTGTGGTAAATGATCATTTTGATGTGTTCTTGGATTTGGTTTGCA
AGAATTTTATTGAGTTTTTTTTTTGCATTGATATTCATAAGCAAAAATGT
TCTGAAGTTCTCTTTCTTTGTTGATTCTTTGTGTGTTTAGGAATAAGTGC
AACTGTGGCTTCATAGAACAAATTGGGTAGCGTTCCTTCTGTTTCTATTT
TGTGGGATAGTTTGAAGAGTATTGGGATTAGGTCTTCTTTGAAGGTCTGA
TAGAATTCTGCACTAAACCCATCTAGTCCTGGGCTTTGTTTGGTTGGGAG
ACTTTTAATGACTGCTTCTATTTCTTTGGCAGTTATGGGAGCGTTAGACT
GCTTATCTGATCCTGGTTTCATTTTGGTACCCACTGTCTGCCTAGAAAAT
TGTCCATTTCATCCCATTTTTTCAGTATTGTTGAGAAAGCCCTTTTGTAA
TAGGAAATAATGATTTTTGAAAATTCCGGTTATCCCGCGGGGATATTCCC
CCTTTCCAATTCTGAATTTTGTTAATAAGAAACAGACTTCTTTTCCCCCC
GGTAAATCCTGGGCAGAGGTTACCCCTTCTTTGTTGCTTCCCTAAAAACC

CCTTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTAGGAAAGAACAAGAGCCCAAA
AGGCAGAGGAGAAGTGAAAGAATGGATAAAACAGAATCAAATAGTATGAA
ACAGATTGATCACCAGGTATGGATTCACACCTATAATCTAAGCAGTCGGG
AGGCTGTGGTGTGAAGATTGCTGTCAGTTTGAGGTCAGCTTTAGCTGTAC
AATGAGCTCCAGCTTAGGTTATAGTGTGAGACATTGTCTCAAACAAAACC
AAACCAGCAGAACAAAATAGAAATAATTTTTAAATTCTCTTTCTCTGTAA
GGTTGTTATCATGATGCTATGACTAAAACTCCAGTGCATTCTGACGACTA
AAGGAGAGGAGTAAGAAAGCTTTATTCAAGGCAGCTTAACTGGGAAGAGC
AGATGCTGAGGCTTAGTGACCTTAGGTGTGTTTTCATGGAGCTGAGATTT
CTTAGTGATGCCCTCTGTCTCTCTTGTTCTGCTAAGACACTGACCCAAAG
CATATTGGCACAGGAAAGAATTTATGTGGCAGGAACTGAAAAAGAGACCC
GCGAGAGGTTCCTTTTCGTTGGATAGTTCTCAGATAATTTTTTGTTTTTT
GGGTTTTTGTTTTTGGTTTTGGTTNGGGTTTTGGNTTTTATCCAGGCCCA
CCCCCGCAGGAAGTAAGTGTCCAGGTTGAGCTATGCCTGGACTTTTCCCC
ACACTTAAAAAAAGTCCCCCCCACATTATCCGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no479_o23.g1 MSMg01no479_o23.g1 CHROMAT_FILE:
MSMg01no479_o23.g1 PHD_FILE: MSMg01no479_o23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:06 2005
         (517 letters)



>mm_chr5_15183477_15184393
          Length = 917

 Score =  861 bits (445), Expect = 0.0
 Identities = 472/481 (98%)
 Strand = Plus / Minus

                                                                       
Query: 37  agtgaaagaatggataaaacagaatcaaatagtatgaaacagattgatcaccaggtatgg 96
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 908 agtgaaagaatggataaaacagaatcaaatagtatgaaacagattgatcactaggtatgg 849

                                                                       
Query: 97  attcacacctataatctaagcagtcgggaggctgtggtgtgaagattgctgtcagtttga 156
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 attcacacctataatctaagcagtcgggaggctgtggtgtgaagattgctgtcagtttga 789

                                                                       
Query: 157 ggtcagctttagctgtacaatgagctccagcttaggttatagtgtgagacattgtctcaa 216
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ggtcggctttagctgtacaatgagctccagcttaggttatagtgtgagacattgtctcaa 729

                                                                       
Query: 217 acaaaaccaaaccagcagaacaaaatagaaataatttttaaattctctttctctgtaagg 276
           || ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 728 accaaaccaaaccagcagaacaaaatagaaataatttcaaaattctctttctctgtaagg 669

                                                                       
Query: 277 ttgttatcatgatgctatgactaaaactccagtgcattctgacgactaaaggagaggagt 336
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 668 ttgttatcatgatgctatgactaaaactccagcacattctgacgactaaaggagaggagt 609

                                                                       
Query: 337 aagaaagctttattcaaggcagcttaactgggaagagcagatgctgaggcttagtgacct 396
           ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 608 aagaaagttttattcaaggcagcttatctgggaagagcagatgctgaggcttagtgacct 549

                                                                       
Query: 397 taggtgtgttttcatggagctgagatttcttagtgatgccctctgtctctcttgttctgc 456
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 taggtgtgttttcatggagctgagatttcttagtgatgccctctgtctctcttgttctgc 489

                                                                       
Query: 457 taagacactgacccaaagcatattggcacaggaaagaatttatgtggcaggaactgaaaa 516
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 taagacactgacccaaagcatattggcacaggaaagaatttatgtggcaggaactgaaaa 429

            
Query: 517 a 517
           |
Sbjct: 428 a 428


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)