Query= MSMg01no480_d23.b1 MSMg01no480_d23.b1 CHROMAT_FILE:
MSMg01no480_d23.b1 PHD_FILE: MSMg01no480_d23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:29 2005
(633 letters)
>mm_chr5_67703231_67704263
Length = 1033
Score = 1139 bits (589), Expect = 0.0
Identities = 619/629 (98%), Gaps = 1/629 (0%)
Strand = Plus / Plus
Query: 5 gaattcagcaatcctccctgcaagtgattgattgttttccattgctgggttagaattcta 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcaatccaccctgcaagtgattgattgttttccattgctgggttagaattcta 264
Query: 65 ttggcttcattgagtcccatgtgggcccatgtagtttctagcctataagcagttttcagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttggcttcattgagtcccatgtgggcccatgtagtttctagcctataagcagttttcagt 324
Query: 125 tgtgtattaatgctgaaggtatgctgaaagctgctgatacctgaaataccattaacattc 184
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 tgtgtattaatgctgaaggtatgctgaaagctgctgatacctaaaataccattaacattc 384
Query: 185 aagactaagggatgtttccagacagctagcaagggtaaagtattagaaggatttgaagag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagactaagggatgtttccagacagctagcaagggtaaagtattagaaggatttgaagag 444
Query: 245 acctctactggccaagaaataaggccatttgagcattactcaactcgatgactggaatgg 304
|||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 445 acctctactggcca-gaaataaggccatttgagcattactcaactcaatgactggaatgg 503
Query: 305 attgaaatatacagcaaatcatactgaaatctgcacttgtaatgatatctgtaaactaaa 364
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attgaaatatacagcaaatcgtactgaaatctgcacttgtaatgatatctgtaaactaaa 563
Query: 365 accataacacctctgcagtgtgccaggcgacacacttaccattttgagagttggtgcata 424
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 accatggcacctctgcagtgtgccaggcgacacacttaccattttgagagttggtgcata 623
Query: 425 agaaggaagagttaaggcctgaggctagacttacactggattcctgagtaacctcagagc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agaaggaagagttaaggcctgaggctagacttacactggattcctgagtaacctcagagc 683
Query: 485 gggattttctgtgcaaaggcattctgactgagtgaagaaataaccatattagaaggctac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gggattttctgtgcaaaggcattctgactgagtgaagaaataaccatattagaaggctac 743
Query: 545 agttttaaagctgctcagagagtaaaggagtgtagcattgaatagcagtagacattgtca 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agttttaaagctgctcagagagtaaaggagtgtagcattgaatagcagtagacattgtca 803
Query: 605 taagtaaagggaaaattagatactggatg 633
||| |||||| ||||||||||||| ||||
Sbjct: 804 taaataaaggaaaaattagatactagatg 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no480_d23.g1 MSMg01no480_d23.g1 CHROMAT_FILE:
MSMg01no480_d23.g1 PHD_FILE: MSMg01no480_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:00:29 2005
(568 letters)
>mm_chr5_67876052_67877019
Length = 968
Score = 963 bits (498), Expect = 0.0
Identities = 528/538 (98%), Gaps = 2/538 (0%)
Strand = Plus / Minus
Query: 1 tttctttcttttattctctctttgagcttatttggtgacagttagccatcattaatacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tttctttcttttattctctctttgagcttatttggtgacagttagccatcattaatacac 478
Query: 61 aaggctgtggtttgaatgtgatcaccaaagctttcgagttgaaaacttagctcccagtgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 aaggctgtggtttgaatgtgatcaccaaagctttcgagttgaaaacttagctcccagtgt 418
Query: 121 tttgagagactgagctttgtaaagggtggttgggtggtgagaacagagttctggcctggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tttgagagactgagctttgtaaagggtggttgggtggtgagaacagagttctggcctggt 358
Query: 181 aaatggcctgaggtcatcactgtgagggtgggctagctatctccaaagtaggactgtccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 aaatggcctgaggtcatcactgtgagggtgggctagctatctccaaagtaggactgtccc 298
Query: 241 aaaag-tgtctttgtcctgctccttccctctcttttccttagaccgtatcttttggacaa 299
||||| | ||| ||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 297 aaaagcag-cttcgtcctgctccttccctctcttttccttagacagtagcttttggacaa 239
Query: 300 tgcagtgcaaacaccatctccgggcatgagagccatgctcctggactccagagctgtagt 359
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tgcagtgcaaacgccatctctgggcatgagagccatgctcctggactccagagctgtagt 179
Query: 360 caatctctaatctttgtaagttatccagtctcaaataatctcacatggaaacacagaaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 caatctctaatctttgtaagttatccagtctcaaataatctcacatggaaacacagaaca 119
Query: 420 gatgaaggtgggtaagaaaagcgagtatgagcctacgagggaagcatcccagggtagagt 479
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 gatgaaggtgggtagggaaagcgagtatgagcctacgagggaagcatcccagggtagagt 59
Query: 480 cttctcagagaaaagtaaggacactggtgagcaagtatcaaagggaagatcccattcc 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58 cttctcagagaaaagtaaggacactggtgagcaagtatcaaagggaagatcccattcc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space: 534564
Effective search space used: 534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
